DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pop2 and AT5G10960

DIOPT Version :9

Sequence 1:NP_001287041.1 Gene:Pop2 / 39366 FlyBaseID:FBgn0036239 Length:361 Species:Drosophila melanogaster
Sequence 2:NP_196657.1 Gene:AT5G10960 / 830963 AraportID:AT5G10960 Length:277 Species:Arabidopsis thaliana


Alignment Length:237 Identity:128/237 - (54%)
Similarity:173/237 - (72%) Gaps:5/237 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 IRDVWKQNLEEEFRTIRKVVQKYHYVAMDTEFPGVVARPVGEFRSTADYHYQLLRCNVDLLRIIQ 89
            ||:||..||.|||..||::|.|:.|:||||||||||.:||..|:...|.:|:.|:.|||||::||
plant    12 IREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENVDLLKLIQ 76

  Fly    90 LGLTFMDDDGKTP----PGYSTWQFNFK-FNLSEDMYAQDSIDLLQNSGIQFKKHEEDGIDPIDF 149
            :||||.|::|..|    ..:..|||||: ||:.||:||.:||:||:..||.|||:.|.|||.:.|
plant    77 VGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRF 141

  Fly   150 AELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHIYFPNIFDIKYLMKS 214
            .||:|||||||.:.|.|:.||.|||||||:||||.:.||..:::||.||::|||.::|||:||..
plant   142 GELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKLLYVYFPTVYDIKHLMTF 206

  Fly   215 CKNLKGGLQEVADQLELRRVGPQHQAGSDALLTGMAFFKMRE 256
            |..|.|||..:|:.:.:.|||..||||||:|||..:|.|::|
plant   207 CNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRKLKE 248

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pop2NP_001287041.1 CAF1 25..257 CDD:304961 128/237 (54%)
AT5G10960NP_196657.1 CAF1 12..269 CDD:390100 128/237 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 136 1.000 Domainoid score I1592
eggNOG 1 0.900 - - E1_COG5228
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H49011
Inparanoid 1 1.050 284 1.000 Inparanoid score I858
OMA 1 1.010 - - QHG54002
OrthoDB 1 1.010 - - D931256at2759
OrthoFinder 1 1.000 - - FOG0001271
OrthoInspector 1 1.000 - - otm2490
orthoMCL 1 0.900 - - OOG6_101138
Panther 1 1.100 - - O PTHR10797
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X785
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

Return to query results.
Submit another query.