DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pop2 and Cnot8

DIOPT Version :10

Sequence 1:NP_001287041.1 Gene:Pop2 / 39366 FlyBaseID:FBgn0036239 Length:361 Species:Drosophila melanogaster
Sequence 2:NP_081225.1 Gene:Cnot8 / 69125 MGIID:1916375 Length:292 Species:Mus musculus


Alignment Length:253 Identity:172/253 - (67%)
Similarity:213/253 - (84%) Gaps:9/253 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 MPSAISGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYVAMDTEFPGVVARPVGEFRS 69
            ||:|        :..|.:. |.:||..|||||.|.||::|..|.|:||||||||||.||:|||||
Mouse     1 MPAA--------LVENSQV-ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRS 56

  Fly    70 TADYHYQLLRCNVDLLRIIQLGLTFMDDDGKTPPGYSTWQFNFKFNLSEDMYAQDSIDLLQNSGI 134
            :.||.|||||||||||:||||||||.::.|:.|.|.:||||||||||:||||:|||||||.|||:
Mouse    57 SIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSGL 121

  Fly   135 QFKKHEEDGIDPIDFAELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLH 199
            ||:||||:|||.:.||||||:||:||.:|:|||.|||||||||::|||||..||.:|.|||.:|:
Mouse   122 QFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILN 186

  Fly   200 IYFPNIFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDALLTGMAFFKMREV 257
            ::||:|:|:|||||||||||||||||||||:|:|:|.|||||||:||||||||:|:|:
Mouse   187 LFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKEL 244

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pop2NP_001287041.1 CAF1 25..257 CDD:474062 167/231 (72%)
Cnot8NP_081225.1 CAF1 1..263 CDD:474062 172/253 (68%)

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