DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pop2 and cnot8

DIOPT Version :9

Sequence 1:NP_001287041.1 Gene:Pop2 / 39366 FlyBaseID:FBgn0036239 Length:361 Species:Drosophila melanogaster
Sequence 2:NP_998644.1 Gene:cnot8 / 406788 ZFINID:ZDB-GENE-040426-2845 Length:285 Species:Danio rerio


Alignment Length:253 Identity:178/253 - (70%)
Similarity:216/253 - (85%) Gaps:9/253 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 MPSAISGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYVAMDTEFPGVVARPVGEFRS 69
            ||:|::.....         |.:||..|:|||.|.||:::|.|:|:||||||||||.||:|||||
Zfish     1 MPAALADTSQI---------ICEVWASNVEEEMRKIRQIIQNYNYIAMDTEFPGVVVRPIGEFRS 56

  Fly    70 TADYHYQLLRCNVDLLRIIQLGLTFMDDDGKTPPGYSTWQFNFKFNLSEDMYAQDSIDLLQNSGI 134
            |.||.|||||||||||:|:|||||||::||..|||.:||||||||||:||||:|||||||||||:
Zfish    57 TVDYQYQLLRCNVDLLKIVQLGLTFMNEDGDYPPGTTTWQFNFKFNLTEDMYSQDSIDLLQNSGL 121

  Fly   135 QFKKHEEDGIDPIDFAELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLH 199
            |||||||:|||.:.||||||:||:||.||:|||.||||||||||:|||||..||.:|.|||.:|:
Zfish   122 QFKKHEEEGIDTLYFAELLMTSGLVLCENVKWLSFHSGYDFGYLVKLLTDSRLPEEEHEFFQILN 186

  Fly   200 IYFPNIFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDALLTGMAFFKMREV 257
            ::||.|:|:|||||||||||||||||||||||:|:|.|||||||:||||||||:|:|:
Zfish   187 LFFPAIYDVKYLMKSCKNLKGGLQEVADQLELKRIGRQHQAGSDSLLTGMAFFRMKEL 244

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pop2NP_001287041.1 CAF1 25..257 CDD:304961 174/231 (75%)
cnot8NP_998644.1 CAF1 1..264 CDD:304961 178/253 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170595756
Domainoid 1 1.000 203 1.000 Domainoid score I2918
eggNOG 1 0.900 - - E1_COG5228
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 384 1.000 Inparanoid score I1996
OMA 1 1.010 - - QHG54002
OrthoDB 1 1.010 - - D365788at33208
OrthoFinder 1 1.000 - - FOG0001271
OrthoInspector 1 1.000 - - otm26565
orthoMCL 1 0.900 - - OOG6_101138
Panther 1 1.100 - - O PTHR10797
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R161
SonicParanoid 1 1.000 - - X785
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

Return to query results.
Submit another query.