DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pop2 and ccf-1

DIOPT Version :9

Sequence 1:NP_001287041.1 Gene:Pop2 / 39366 FlyBaseID:FBgn0036239 Length:361 Species:Drosophila melanogaster
Sequence 2:NP_499553.1 Gene:ccf-1 / 176625 WormBaseID:WBGene00000369 Length:310 Species:Caenorhabditis elegans


Alignment Length:301 Identity:134/301 - (44%)
Similarity:188/301 - (62%) Gaps:21/301 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 SGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYVAMDTEFPGVVARPVGEFRSTADYH 74
            ||||        |..|.:|:..|:||||..||..|:.|.|||||||||||||.|:|.|||..|::
 Worm    16 SGAP--------EVKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATPLGTFRSKEDFN 72

  Fly    75 YQLLRCNVDLLRIIQLGLTFMDDDGKTPPGYSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKH 139
            ||.:.|||::|::||:|...::|.|:.||....|||||.|:.:|||::.:|:::|:.:||.|...
 Worm    73 YQQVFCNVNMLKLIQVGFAMVNDKGELPPTGDVWQFNFNFSFAEDMFSHESVEMLRQAGIDFTLL 137

  Fly   140 EEDGIDPIDFAELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHIYFPN 204
            :.:||....|.|||.:||::....|.||.|.||||||||||.:|..:||.:||.||......||.
 Worm   138 QNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFMCHKTLFPT 202

  Fly   205 IFDIKYLMK--SCKN--LKGGLQEVADQLELRRVGPQHQAGSDALLTGMAFFKMREVQHTNDFH- 264
            .||||.|::  :|.:  ||||||||||||:::|.|.:||||||||||...|||:::....:::: 
 Worm   203 SFDIKILLRTPNCASAKLKGGLQEVADQLDVKRQGVRHQAGSDALLTAATFFKIKKQFFGDNWNQ 267

  Fly   265 ITPVAHDVLFRYLLEHTMNLKPTISCIHLLSRPAYNGGPAP 305
            |.|:        :..|...|..::|..|.....:..|...|
 Worm   268 IAPL--------ICGHMFGLGSSLSLFHSSGSTSRLGDETP 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pop2NP_001287041.1 CAF1 25..257 CDD:304961 121/235 (51%)
ccf-1NP_499553.1 CAF1 23..292 CDD:304961 127/276 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167121
Domainoid 1 1.000 131 1.000 Domainoid score I3213
eggNOG 1 0.900 - - E1_COG5228
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H49011
Inparanoid 1 1.050 245 1.000 Inparanoid score I2053
Isobase 1 0.950 - 0 Normalized mean entropy S870
OMA 1 1.010 - - QHG54002
OrthoDB 1 1.010 - - D365788at33208
OrthoFinder 1 1.000 - - FOG0001271
OrthoInspector 1 1.000 - - oto20391
orthoMCL 1 0.900 - - OOG6_101138
Panther 1 1.100 - - LDO PTHR10797
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R161
SonicParanoid 1 1.000 - - X785
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1716.790

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