DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pop2 and cnot7

DIOPT Version :9

Sequence 1:NP_001287041.1 Gene:Pop2 / 39366 FlyBaseID:FBgn0036239 Length:361 Species:Drosophila melanogaster
Sequence 2:NP_001096375.1 Gene:cnot7 / 100124970 XenbaseID:XB-GENE-969324 Length:285 Species:Xenopus tropicalis


Alignment Length:305 Identity:184/305 - (60%)
Similarity:226/305 - (74%) Gaps:41/305 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 IRDVWKQNLEEEFRTIRKVVQKYHYVAMDTEFPGVVARPVGEFRSTADYHYQLLRCNVDLLRIIQ 89
            |.:||..||:::.:.||:|::||:|||||||||||||||:|||||.|||.|||||||||||:|||
 Frog    12 ICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQ 76

  Fly    90 LGLTFMDDDGKTPPGYSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGIDPIDFAELLM 154
            |||||:::.|:.|||.|||||||||||:|||||||||:||.:||||||||||:||:...||||.|
 Frog    77 LGLTFVNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFM 141

  Fly   155 SSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHIYFPNIFDIKYLMKSCKNLK 219
            :||:||.|.:|||.||||||||||:|:||:.|||..|.:||::|.::||.|:|:|||||||||||
 Frog   142 TSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVELDFFEILRLFFPVIYDVKYLMKSCKNLK 206

  Fly   220 GGLQEVADQLELRRVGPQHQAGSDALLTGMAFFKMREVQHTNDFHITPVAHDVLFRYLLEHTMNL 284
            |||||||:||||:|:|||||||||:||||||||||||:                  :..:|..:.
 Frog   207 GGLQEVAEQLELKRIGPQHQAGSDSLLTGMAFFKMREM------------------FFEDHIDDA 253

  Fly   285 KPTISCIHLLSRPAYNGGPAPDESAIISSG-----NGTGNTNSTE 324
            |   .|.||..               :.||     |||||....|
 Frog   254 K---YCGHLYG---------------LGSGSSYVQNGTGNAYEEE 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pop2NP_001287041.1 CAF1 25..257 CDD:304961 170/231 (74%)
cnot7NP_001096375.1 CAF1 1..279 CDD:420020 183/302 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 191 1.000 Domainoid score I3175
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H49011
Inparanoid 1 1.050 372 1.000 Inparanoid score I2073
OMA 1 1.010 - - QHG54002
OrthoDB 1 1.010 - - D365788at33208
OrthoFinder 1 1.000 - - FOG0001271
OrthoInspector 1 1.000 - - otm48014
Panther 1 1.100 - - LDO PTHR10797
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R161
SonicParanoid 1 1.000 - - X785
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

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