DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt4R and YTA12

DIOPT Version :10

Sequence 1:NP_648525.1 Gene:Rpt4R / 39351 FlyBaseID:FBgn0036224 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_013807.1 Gene:YTA12 / 855114 SGDID:S000004695 Length:825 Species:Saccharomyces cerevisiae


Alignment Length:259 Identity:97/259 - (37%)
Similarity:147/259 - (56%) Gaps:6/259 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 VNYAEIGGLGQQIRELREVIELPLLNPDIFLRVGISPPKGCLLYGPPGTGKTLLARAIASQMDAN 203
            :.:.::.|..:...|:.|.:.. |..|..:.::|...|:|.:|.|||||||||||:|.|.:....
Yeast   345 IKFKDVAGCDEAKEEIMEFVSF-LKEPSRYEKMGAKIPRGAILSGPPGTGKTLLAKATAGEAGVP 408

  Fly   204 FLKVVSSAIVDKYIGESARLIREMFAYARDHQPCIIFMDEIDAIG-GRRFSEGTSADREIQRTLM 267
            |..|..|..|:.::|..|..:|::|..||::.|.|:|:||||||| .|:....:.|:.|.:.||.
Yeast   409 FYFVSGSEFVEMFVGVGAARVRDLFKTARENAPSIVFIDEIDAIGKARQKGNFSGANDERENTLN 473

  Fly   268 ELLNQMDGFDALGQVKMIMATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAEPLNKR 332
            ::|.:||||.....|.::..|||||.||.|||||||.||.:.|..|....|..|..:|...|...
Yeast   474 QMLVEMDGFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINIDKPELEGRKAIFAVHLHHLKLA 538

  Fly   333 GEIDYEAVVKLSDL---FNGADLRNICTEAGLFALRCDREFVIQEDFMKAVRKIADNKKLESRL 393
            ||| ::...:|:.|   |:|||:.|:|.||.|.|.|.|.:.|....|.:|:.::....:.:|:|
Yeast   539 GEI-FDLKNRLAALTPGFSGADIANVCNEAALIAARSDEDAVKLNHFEQAIERVIGGVERKSKL 601

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt4RNP_648525.1 PRK03992 13..388 CDD:179699 95/252 (38%)
YTA12NP_013807.1 FtsH_ext <205..282 CDD:377663
FtsH_fam 290..784 CDD:273520 97/259 (37%)
Blue background indicates that the domain is not in the aligned region.

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