DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpt4R and Psmc5

DIOPT Version :9

Sequence 1:NP_001287039.1 Gene:Rpt4R / 39351 FlyBaseID:FBgn0036224 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_112411.1 Gene:Psmc5 / 81827 RGDID:708376 Length:406 Species:Rattus norvegicus


Alignment Length:386 Identity:175/386 - (45%)
Similarity:251/386 - (65%) Gaps:10/386 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 ERVRALTNYRTKLLEHREIESKLKALRDKYKVVNAEYEKSEDDLKALQSVGQMVGEILKQLTPDN 77
            |.::.:.|.:::.|.      :|:|.|::   :||:.....::|:.||..|..|||:::.:....
  Rat    29 EELQLIVNDKSQNLR------RLQAQRNE---LNAKVRLLREELQLLQEQGSYVGEVVRAMDKKK 84

  Fly    78 FIVKASNGPRYVVGCRRQINKEKLKPGTRVALDVTTLTIMRYLPREVDPLVYNMTHEDPGNVNYA 142
            .:||.....::||...:.|:...:.|..||||...:.|:.:.||.:|||||..|..|...:..|.
  Rat    85 VLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYE 149

  Fly   143 EIGGLGQQIRELREVIELPLLNPDIFLRVGISPPKGCLLYGPPGTGKTLLARAIASQMDANFLKV 207
            .||||.:||:|::||||||:.:|::|..:||:.|||.||||||||||||||||:|...|..|::|
  Rat   150 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 214

  Fly   208 VSSAIVDKYIGESARLIREMFAYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 272
            ..|.:|.|:|||.||::||:|..||:|.|.||||||||:||..|...|:..|.|:|||::|||||
  Rat   215 SGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQ 279

  Fly   273 MDGFDALGQVKMIMATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAEPLNKRGEIDY 337
            :|||:|...:|:||||||.|.||.|||||||:|||:|.|.|||.||:||||||:..:|....|:.
  Rat   280 LDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINL 344

  Fly   338 EAVVKLSDLFNGADLRNICTEAGLFALRCDREFVIQEDFMKAVRKIADNKKLESRLDYKPI 398
            ..:.:|....:||:::.:|||||::|||..|..|.||||..||.|:. .|..|..:..|.:
  Rat   345 RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM-QKDSEKNMSIKKL 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt4RNP_001287039.1 RPT1 13..396 CDD:224143 174/382 (46%)
AAA 180..312 CDD:278434 82/131 (63%)
Psmc5NP_112411.1 RPT1 4..404 CDD:224143 175/384 (46%)
May mediate interaction with PRPF9. /evidence=ECO:0000250|UniProtKB:P62196 186..406 119/220 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.