DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt4R and Rpt1

DIOPT Version :9

Sequence 1:NP_001287039.1 Gene:Rpt4R / 39351 FlyBaseID:FBgn0036224 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster


Alignment Length:421 Identity:171/421 - (40%)
Similarity:256/421 - (60%) Gaps:59/421 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 DDERVRALTNYRTKLLEHREIESK-LKALRDKYKVV------NAEYEKS-----EDDLKALQSVG 63
            ||:|          .::|.|.|.| :|:| |:..:.      .::|.||     ||..||::.|.
  Fly     7 DDQR----------KVKHDEKEDKEIKSL-DEGDIELLKTYGQSQYHKSIKSIEEDIQKAVKQVN 60

  Fly    64 QMVG--------------------EILKQLTP------DNFIVKASNGPRYVVGCRR-------- 94
            ::.|                    :||:...|      ...|...|:.|:|::..::        
  Fly    61 ELTGIKESDTGLAPPALWDLAADKQILQNEQPLQVARCTKIINADSDDPKYIINVKQFAKFVVDL 125

  Fly    95 --QINKEKLKPGTRVALDVTTLTIMRYLPREVDPLVYNMTHEDPGNVNYAEIGGLGQQIRELREV 157
              .:....::.|.||.:|.....|...||.::||.|..|..||..:|.|:::||..:||.:||||
  Fly   126 ADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREV 190

  Fly   158 IELPLLNPDIFLRVGISPPKGCLLYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESAR 222
            :|.|||:|:.|:.:||.||||.||:|||||||||.|||:|::.||.|::|:.|.:|.||:||.||
  Fly   191 VETPLLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGAR 255

  Fly   223 LIREMFAYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDALGQVKMIMA 287
            ::||:|..||..:.|:||.||||||||.||.:|...|.|:|||::||:||:||||..|.:|::||
  Fly   256 MVRELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMA 320

  Fly   288 TNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAEPLNKRGEIDYEAVVKLSDLFNGADL 352
            |||||||||||:||||||||:|..||::..|..|.||||..::...:|.::.:.:|.....||::
  Fly   321 TNRPDTLDPALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRFDLLARLCPNSTGAEI 385

  Fly   353 RNICTEAGLFALRCDREFVIQEDFMKAVRKI 383
            |::|||||:||:|..|:...::||::||:|:
  Fly   386 RSVCTEAGMFAIRARRKVATEKDFLEAVKKV 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt4RNP_001287039.1 RPT1 13..396 CDD:224143 169/419 (40%)
AAA 180..312 CDD:278434 83/131 (63%)
Rpt1NP_477473.1 RPT1 27..430 CDD:224143 161/390 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45445435
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23073
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.950

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