DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt4R and Psmc2

DIOPT Version :9

Sequence 1:NP_001287039.1 Gene:Rpt4R / 39351 FlyBaseID:FBgn0036224 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_150239.2 Gene:Psmc2 / 25581 RGDID:3428 Length:433 Species:Rattus norvegicus


Alignment Length:399 Identity:167/399 - (41%)
Similarity:246/399 - (61%) Gaps:26/399 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 DDERVRALTNYRTKLL----------EHREIESKLKALRDKYKVVNAEYEKSED----------- 54
            ||:.:|||......||          :.:::|..::.|..|...:....|....           
  Rat    18 DDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAA 82

  Fly    55 DLKALQSVGQM-VGEILKQLTPDN----FIVKASNGPRYVVGCRRQINKEKLKPGTRVALDVTTL 114
            |.:.|||...: |....|.:..|:    :|:......::||....|:....::.|.||.:|....
  Rat    83 DKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKY 147

  Fly   115 TIMRYLPREVDPLVYNMTHEDPGNVNYAEIGGLGQQIRELREVIELPLLNPDIFLRVGISPPKGC 179
            .|...||.::||.|..|..|:..:|.|:::||..:||.:||||:|.|||:|:.|:.:||.||||.
  Rat   148 QIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGV 212

  Fly   180 LLYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFAYARDHQPCIIFMDEI 244
            ||:|||||||||.|||:|::.||.|::|:.|.:|.||:||.||::||:|..||..:.|:||.|||
  Rat   213 LLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEI 277

  Fly   245 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDALGQVKMIMATNRPDTLDPALLRPGRLDRKLE 309
            |||||.||.:|...|.|:|||::||:||:||||..|.:|::|||||||||||||:||||||||:|
  Rat   278 DAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIE 342

  Fly   310 IPLPNEVARMDILKIHAEPLNKRGEIDYEAVVKLSDLFNGADLRNICTEAGLFALRCDREFVIQE 374
            ..||:...|..|.||||..::...:|.:|.:.:|.....||::|::|||||:||:|..|:...::
  Rat   343 FSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEK 407

  Fly   375 DFMKAVRKI 383
            ||::||.|:
  Rat   408 DFLEAVNKV 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt4RNP_001287039.1 RPT1 13..396 CDD:224143 165/397 (42%)
AAA 180..312 CDD:278434 83/131 (63%)
Psmc2NP_150239.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..22 2/3 (67%)
RPT1 23..430 CDD:224143 165/394 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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