DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt4R and Psmc2

DIOPT Version :10

Sequence 1:NP_648525.1 Gene:Rpt4R / 39351 FlyBaseID:FBgn0036224 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_150239.2 Gene:Psmc2 / 25581 RGDID:3428 Length:433 Species:Rattus norvegicus


Alignment Length:399 Identity:167/399 - (41%)
Similarity:246/399 - (61%) Gaps:26/399 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 DDERVRALTNYRTKLL----------EHREIESKLKALRDKYKVVNAEYEKSED----------- 54
            ||:.:|||......||          :.:::|..::.|..|...:....|....           
  Rat    18 DDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAA 82

  Fly    55 DLKALQSVGQM-VGEILKQLTPDN----FIVKASNGPRYVVGCRRQINKEKLKPGTRVALDVTTL 114
            |.:.|||...: |....|.:..|:    :|:......::||....|:....::.|.||.:|....
  Rat    83 DKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKY 147

  Fly   115 TIMRYLPREVDPLVYNMTHEDPGNVNYAEIGGLGQQIRELREVIELPLLNPDIFLRVGISPPKGC 179
            .|...||.::||.|..|..|:..:|.|:::||..:||.:||||:|.|||:|:.|:.:||.||||.
  Rat   148 QIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGV 212

  Fly   180 LLYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFAYARDHQPCIIFMDEI 244
            ||:|||||||||.|||:|::.||.|::|:.|.:|.||:||.||::||:|..||..:.|:||.|||
  Rat   213 LLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEI 277

  Fly   245 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDALGQVKMIMATNRPDTLDPALLRPGRLDRKLE 309
            |||||.||.:|...|.|:|||::||:||:||||..|.:|::|||||||||||||:||||||||:|
  Rat   278 DAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIE 342

  Fly   310 IPLPNEVARMDILKIHAEPLNKRGEIDYEAVVKLSDLFNGADLRNICTEAGLFALRCDREFVIQE 374
            ..||:...|..|.||||..::...:|.:|.:.:|.....||::|::|||||:||:|..|:...::
  Rat   343 FSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEK 407

  Fly   375 DFMKAVRKI 383
            ||::||.|:
  Rat   408 DFLEAVNKV 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt4RNP_648525.1 PRK03992 13..388 CDD:179699 165/397 (42%)
Psmc2NP_150239.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..22 2/3 (67%)
PRK03992 44..430 CDD:179699 160/373 (43%)

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