DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt4R and rpt4

DIOPT Version :9

Sequence 1:NP_001287039.1 Gene:Rpt4R / 39351 FlyBaseID:FBgn0036224 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_587809.2 Gene:rpt4 / 2539189 PomBaseID:SPCC1682.16 Length:388 Species:Schizosaccharomyces pombe


Alignment Length:386 Identity:278/386 - (72%)
Similarity:333/386 - (86%) Gaps:0/386 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 ERVRALTNYRTKLLEHREIESKLKALRDKYKVVNAEYEKSEDDLKALQSVGQMVGEILKQLTPDN 77
            ||..||..|::.||:|||.:||||.||...:.:..:|:|:|||:|:||||||::||:||||..:.
pombe     3 ERDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSER 67

  Fly    78 FIVKASNGPRYVVGCRRQINKEKLKPGTRVALDVTTLTIMRYLPREVDPLVYNMTHEDPGNVNYA 142
            ||||||:|||||||||..:::..|..|.||:||:|||||||.||||||||||||:.||||::::|
pombe    68 FIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPGDISFA 132

  Fly   143 EIGGLGQQIRELREVIELPLLNPDIFLRVGISPPKGCLLYGPPGTGKTLLARAIASQMDANFLKV 207
            .:|||.:|||||||||||||.||::||||||.||||.||||||||||||||||:|:.:..|||||
pombe   133 GVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKV 197

  Fly   208 VSSAIVDKYIGESARLIREMFAYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 272
            |||||||||||||||:|||||.||::|:||:||||||||||||||||||||||||||||||||||
pombe   198 VSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 262

  Fly   273 MDGFDALGQVKMIMATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAEPLNKRGEIDY 337
            |||||.|||.|:|||||||||||||||||||||||:||||||||.||:|||||.|.::|:|||||
pombe   263 MDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDY 327

  Fly   338 EAVVKLSDLFNGADLRNICTEAGLFALRCDREFVIQEDFMKAVRKIADNKKLESRLDYKPI 398
            ||:|||:|..|||||||:.||||..|::.||::|||.|.|.|.||:||.||||..:||:.:
pombe   328 EALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLKKLEGTIDYQKL 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt4RNP_001287039.1 RPT1 13..396 CDD:224143 277/382 (73%)
AAA 180..312 CDD:278434 115/131 (88%)
rpt4NP_587809.2 RPT1 1..386 CDD:224143 277/382 (73%)
AAA_16 136..>190 CDD:289934 44/53 (83%)
AAA 169..302 CDD:278434 115/132 (87%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 243 1.000 Domainoid score I436
eggNOG 1 0.900 - - E1_COG1222
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 577 1.000 Inparanoid score I173
OMA 1 1.010 - - QHG53508
OrthoFinder 1 1.000 - - FOG0003819
OrthoInspector 1 1.000 - - otm47065
orthoMCL 1 0.900 - - OOG6_101751
Panther 1 1.100 - - O PTHR23073
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2663
TreeFam 1 0.960 - -
1211.830

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