DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt4R and Psmc4

DIOPT Version :9

Sequence 1:NP_001287039.1 Gene:Rpt4R / 39351 FlyBaseID:FBgn0036224 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_036004.2 Gene:Psmc4 / 23996 MGIID:1346093 Length:418 Species:Mus musculus


Alignment Length:392 Identity:162/392 - (41%)
Similarity:245/392 - (62%) Gaps:3/392 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LANPPTDDERVRALTNYRTKLLEHREIESKLKALRDKYKVVNAEYEKSEDDLKALQSVGQMVGEI 69
            |...|.|.|.:.:......:.||..|::.:.  ::|:.|.:..|:..:::::|.:||:..::|:.
Mouse    30 LGPEPEDLEDLYSRYKKLQQELEFLEVQEEY--IKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQF 92

  Fly    70 LKQLTPDNFIVKASNGPRYVVGCRRQINKEKLKPGTRVALDVTTLTIMRYLPREVDPLVYNMTHE 134
            |:.:..:..||.::.|..|.|.....|::|.|||...|||...:..::..||.|.|..:..:|.:
Mouse    93 LEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSD 157

  Fly   135 DPGNVNYAEIGGLGQQIRELREVIELPLLNPDIFLRVGISPPKGCLLYGPPGTGKTLLARAIASQ 199
            ...:|.||:|||:..|.:|:||.:||||.:.:::.::||.||:|.|:|||||.|||:||:|:|..
Mouse   158 QKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHH 222

  Fly   200 MDANFLKVVSSAIVDKYIGESARLIREMFAYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 264
            ..|.|::||.|..|.||:||..|::|::|..|:::.|.|||:||||||..:||...|.||||:||
Mouse   223 TTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQR 287

  Fly   265 TLMELLNQMDGFDALGQVKMIMATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAEPL 329
            .|:||||||||||....||:||||||.||||||||||||||||:|.|||:...:..|.......:
Mouse   288 ILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKM 352

  Fly   330 NKRGEIDYEAVVKLSDLFNGADLRNICTEAGLFALRCDREFVIQEDFMKAVRKIADNKKLESRLD 394
            |...|:|.|..|...|..:|||:.:||.|:|:.|:|.:|..|:.:||.||.:.:....:.|... 
Mouse   353 NLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEF- 416

  Fly   395 YK 396
            ||
Mouse   417 YK 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt4RNP_001287039.1 RPT1 13..396 CDD:224143 157/382 (41%)
AAA 180..312 CDD:278434 82/131 (63%)
Psmc4NP_036004.2 PTZ00454 34..418 CDD:240423 159/386 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1222
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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