DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt4R and ppgn-1

DIOPT Version :10

Sequence 1:NP_648525.1 Gene:Rpt4R / 39351 FlyBaseID:FBgn0036224 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_500191.3 Gene:ppgn-1 / 177021 WormBaseID:WBGene00021425 Length:747 Species:Caenorhabditis elegans


Alignment Length:286 Identity:99/286 - (34%)
Similarity:152/286 - (53%) Gaps:29/286 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 VDPLVYNMTHEDPG----NVNYAEIGGLGQQIRELREVIELPLLNPDIFLRVGISPPKGCLLYGP 184
            :||      |...|    .:.:.::.|..:...|:||.::. |.||..|.::|...|:|.||.||
 Worm   269 IDP------HSVEGKKQLKIKFKDVAGCSEAKVEIREFVDY-LKNPGRFTKLGAKLPRGALLTGP 326

  Fly   185 PGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFAYARDHQPCIIFMDEIDAIGG 249
            ||.||||||:|:|::....|:.:..|..|:...|..|..||.:|..||...||||::|||||||.
 Worm   327 PGCGKTLLAKALAAESTVPFISMNGSEFVEVIGGLGASRIRGLFKEARSRAPCIIYIDEIDAIGR 391

  Fly   250 RRFSEGTSA-------DREIQRTLMELLNQMDGFDALGQVKMIMATNRPDTLDPALLRPGRLDRK 307
            :| |||..|       ..|.::||.:||.:|||..:...|.::.:|||.|.||.|||||||.||.
 Worm   392 KR-SEGAGAGGGFGGGSGEEEQTLNQLLVEMDGMGSGNGVVVLASTNRADVLDKALLRPGRFDRH 455

  Fly   308 LEIPLPNEVARMDILKIHAEPLNKRGEIDY------EAVVKLSDLFNGADLRNICTEAGLFALRC 366
            :.|.||..:.|.|:.:::...:    ::|:      :.:..|:..|.|||:.|:|.|:.:.|...
 Worm   456 ISIDLPTVLERKDMFELYMRKI----KLDHAPQEYSQRLAALTPGFTGADIMNVCNESAIRAASN 516

  Fly   367 DREFVIQEDFMKAVRKIADNKKLESR 392
            ....|..:|...|:.::....:..||
 Worm   517 KCHVVTHKDMEYALDRVLAGSEKRSR 542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt4RNP_648525.1 PRK03992 13..388 CDD:179699 97/280 (35%)
ppgn-1NP_500191.3 FtsH_ext 111..212 CDD:377663
HflB <277..725 CDD:440233 95/272 (35%)
Blue background indicates that the domain is not in the aligned region.

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