DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpt4R and rpt-6

DIOPT Version :10

Sequence 1:NP_648525.1 Gene:Rpt4R / 39351 FlyBaseID:FBgn0036224 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_499609.1 Gene:rpt-6 / 176661 WormBaseID:WBGene00004506 Length:416 Species:Caenorhabditis elegans


Alignment Length:405 Identity:175/405 - (43%)
Similarity:252/405 - (62%) Gaps:12/405 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SAPLANPPTDDERVRALTNY--------RTKLLEHREIESKLKALRDKYKVVNAEYEKSEDDLKA 58
            |.|.|...|::...:.|..|        :.|:.:..:...:|:|.|::   :|.:....:::|:.
 Worm    14 SKPTAQKLTEESDEKTLRKYFSTKVDDAQQKVADKSQNVRRLQAQRNE---LNTKVRMLKEELQQ 75

  Fly    59 LQSVGQMVGEILKQLTPDNFIVKASNGPRYVVGCRRQINKEKLKPGTRVALDVTTLTIMRYLPRE 123
            |...|..|||:.|.:.....:||.....:|||...:.|:...|..|.||||...:..:.:.||.:
 Worm    76 LHEQGSYVGEVSKAMDKKKVLVKVHPEGKYVVDVDKSIDINSLNTGARVALRADSYALHKLLPNK 140

  Fly   124 VDPLVYNMTHEDPGNVNYAEIGGLGQQIRELREVIELPLLNPDIFLRVGISPPKGCLLYGPPGTG 188
            |||||..|..|...:..|..:|||.:||:|::||||||:.:|::|..:||:.|||.||:||||||
 Worm   141 VDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLFGPPGTG 205

  Fly   189 KTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFAYARDHQPCIIFMDEIDAIGGRRFS 253
            |||||||:|...:..|::|..|.:|.|:|||.||::||:|..||:|.|.||||||||:||..|..
 Worm   206 KTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRVE 270

  Fly   254 EGTSADREIQRTLMELLNQMDGFDALGQVKMIMATNRPDTLDPALLRPGRLDRKLEIPLPNEVAR 318
            ..:..|.|:|||::|||||:|||:|...:|:||||||.|.||||||||||:|||:|.|.|:|.||
 Worm   271 GSSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPAPDEKAR 335

  Fly   319 MDILKIHAEPLNKRGEIDYEAVVKLSDLFNGADLRNICTEAGLFALRCDREFVIQEDFMKAVRKI 383
            .||||||:..:|....|:...:.:.....:||:::::|||||:||||..|..|.||||..||.|:
 Worm   336 ADILKIHSRKMNLMRGINMAKIAEQIPGASGAEVKSVCTEAGMFALRERRIHVTQEDFEMAVGKV 400

  Fly   384 ADNKKLESRLDYKPI 398
            . .|..|..:..|.:
 Worm   401 M-QKDSEKNMSIKKL 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt4RNP_648525.1 PRK03992 13..388 CDD:179699 168/382 (44%)
rpt-6NP_499609.1 PRK03992 52..410 CDD:179699 167/361 (46%)

Return to query results.
Submit another query.