DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpt4R and rpt-3

DIOPT Version :10

Sequence 1:NP_648525.1 Gene:Rpt4R / 39351 FlyBaseID:FBgn0036224 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_498429.1 Gene:rpt-3 / 175925 WormBaseID:WBGene00004503 Length:414 Species:Caenorhabditis elegans


Alignment Length:399 Identity:161/399 - (40%)
Similarity:245/399 - (61%) Gaps:26/399 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 APLAN------PP--------TDDERVRALTNYRTKLLEHREIESKLKALRDKYKVVNAEYEK-- 51
            |||..      ||        :.|:.::..|..|.  |.|      |:.:.|..|:.....||  
 Worm    12 APLQENTSLRPPPLPATCVDVSSDDYIKLTTLERQ--LAH------LQVMEDYIKLETRNLEKEL 68

  Fly    52 --SEDDLKALQSVGQMVGEILKQLTPDNFIVKASNGPRYVVGCRRQINKEKLKPGTRVALDVTTL 114
              :::::|.:|||..::|:.|:.:..::.||.::.|..|.|.....:::|.||||..|||...:.
 Worm    69 LHAQEEVKRIQSVPLVIGQFLEAVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSN 133

  Fly   115 TIMRYLPREVDPLVYNMTHEDPGNVNYAEIGGLGQQIRELREVIELPLLNPDIFLRVGISPPKGC 179
            .::..||.|.|..:..:..::..:::|.:||||..|.:|:||.:||||.:.:::.::||.||:|.
 Worm   134 ALVDVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGV 198

  Fly   180 LLYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFAYARDHQPCIIFMDEI 244
            |:|||||.|||:||:|:|:...|:|::||.|..|.||:||..|::|::|..|:::.|.|||:|||
 Worm   199 LMYGPPGCGKTMLAKAVAANTAASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPSIIFIDEI 263

  Fly   245 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDALGQVKMIMATNRPDTLDPALLRPGRLDRKLE 309
            |||..:||...|.||||:||.|:||||||||||....||:||||||.||||||||||||||||:|
 Worm   264 DAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRQDTLDPALLRPGRLDRKIE 328

  Fly   310 IPLPNEVARMDILKIHAEPLNKRGEIDYEAVVKLSDLFNGADLRNICTEAGLFALRCDREFVIQE 374
            .|||:...:..:.......:|...::|.|..|...|..:|||:.:||.|||:.|:|.:|..|:.:
 Worm   329 FPLPDRRQKRLVFSTVCSRMNLSDDVDLEDWVARPDKISGADINSICQEAGMQAVRENRYVVLTK 393

  Fly   375 DFMKAVRKI 383
            |..||.:.:
 Worm   394 DLEKAYKNV 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt4RNP_648525.1 PRK03992 13..388 CDD:179699 155/375 (41%)
rpt-3NP_498429.1 PTZ00454 35..414 CDD:240423 156/376 (41%)

Return to query results.
Submit another query.