DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpt4R and Psmc1

DIOPT Version :10

Sequence 1:NP_648525.1 Gene:Rpt4R / 39351 FlyBaseID:FBgn0036224 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_476464.1 Gene:Psmc1 / 117263 RGDID:621097 Length:440 Species:Rattus norvegicus


Alignment Length:393 Identity:173/393 - (44%)
Similarity:247/393 - (62%) Gaps:19/393 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 PLANPPTDDERVRALTNYRTK---LLEHREI--ESKLKALRDKYKVVNAEYEKSE-DDLKAL-QS 61
            ||..|.|.. |::.|...|.|   |:|...|  :.::|.|.:|     .|.|:|: |||:.. .|
  Rat    50 PLVTPHTQC-RLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEK-----QEEERSKVDDLRGTPMS 108

  Fly    62 VGQMVGEILKQLTPDNF-IVKASNGPRYVVGCRRQINKEKLKPGTRVALDVTTLTIMRYLPREVD 125
            ||     .|:::..||. ||..|.|..:.|.....::|:.|:||..|.|:.....::..|..:.|
  Rat   109 VG-----TLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTD 168

  Fly   126 PLVYNMTHEDPGNVNYAEIGGLGQQIRELREVIELPLLNPDIFLRVGISPPKGCLLYGPPGTGKT 190
            |||..|..|......||:||||..||:|::|.:||||.:|:.:..:||.||||.:||||||||||
  Rat   169 PLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKT 233

  Fly   191 LLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFAYARDHQPCIIFMDEIDAIGGRRFSEG 255
            |||:|:|:|..|.||:||.|.::.||:|:..:|:||:|..|.:|.|.|:|:|||||||.:|:...
  Rat   234 LLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSN 298

  Fly   256 TSADREIQRTLMELLNQMDGFDALGQVKMIMATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMD 320
            :..:||||||::|||||:||||:.|.||:||||||.:||||||:||||:|||:|.|||:|..:..
  Rat   299 SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKR 363

  Fly   321 ILKIHAEPLNKRGEIDYEAVVKLSDLFNGADLRNICTEAGLFALRCDREFVIQEDFMKAVRKIAD 385
            |.:||...:....::..:.::...|..:|||::.|||||||.|||..|..|..|||.|:...:..
  Rat   364 IFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLY 428

  Fly   386 NKK 388
            .|:
  Rat   429 KKQ 431

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt4RNP_648525.1 PRK03992 13..388 CDD:179699 168/382 (44%)
Psmc1NP_476464.1 PTZ00361 1..440 CDD:185575 173/393 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..49
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 84..104 9/24 (38%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.