DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment byn and tbr1

DIOPT Version :9

Sequence 1:NP_524031.2 Gene:byn / 39349 FlyBaseID:FBgn0011723 Length:697 Species:Drosophila melanogaster
Sequence 2:NP_001072587.1 Gene:tbr1 / 780042 XenbaseID:XB-GENE-942241 Length:677 Species:Xenopus tropicalis


Alignment Length:611 Identity:171/611 - (27%)
Similarity:255/611 - (41%) Gaps:153/611 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 GGAGGGAGSGSP-QHVTHN---GHGHGHGLGGVAAVSG---GGASVSGNGGHRVVG------GAG 78
            |.|......||| :::.|:   .:|..:.|.|.:|..|   .|...|...||....      .|.
 Frog   133 GAAHPAFSLGSPGRYMAHHPVIANGAYNSLLGNSAPQGYPSAGYPYSQQYGHSYQAAPFYQFSAT 197

  Fly    79 SPNELDRNLRISLDDRELWLRFQNLTNEMIVTKNGRRMFPVVKISASGLDPAAMYTVLLEFVQID 143
            .|..:....::.|.:|.|||:|.....|||:||.||||||.:..:.|||||.|.|.:.::.:..|
 Frog   198 QPGLVPGKAQVYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNISGLDPTAHYNIFVDVILAD 262

  Fly   144 SHRWKYVNGEWVPGGKAEV-PPSNPIYVHPESPNFGAHWMKEPISFAKVKLTNK---TNGNGQ-I 203
            .:.|::..|:|||.|||:. ...|.:|:||:|||.|||||::.|||.|:||||.   :|.||| :
 Frog   263 PNHWRFQGGKWVPCGKADTNVQGNRVYMHPDSPNTGAHWMRQEISFGKMKLTNNKGASNNNGQMV 327

  Fly   204 MLNSLHKYEPRVHLVRVG-------SEQRHVVTYPFPETQFIAVTAYQNEEVTSLKIKYNPFAKA 261
            :|.|||||:||:|:|.|.       |:...|.|:.||||||||||||||.::|.|||.:|||||.
 Frog   328 VLQSLHKYQPRLHVVEVNEDGTEDTSQPGRVQTFTFPETQFIAVTAYQNTDITQLKIDHNPFAKG 392

  Fly   262 FLDAKERPDTLY-----------PHDTHYGWLIPPPTHYTAAAAAVAAPPPLSIAQSHGLVASCP 315
            |   ::..||:|           |:|:....:: |...|:.|:.                     
 Frog   393 F---RDNYDTIYTGCDLDRLTPSPNDSPRSQIV-PGARYSMAST--------------------- 432

  Fly   316 SVSSAESVGPSSGGSCDRYGRSLSSRSVAPTRTTPYSRPRVVSGSGSNGSAGNASS-TSPQ---P 376
                                 .|..:.|:....:.:..|..|.|.|::.|..:.:. .|||   .
 Frog   433 ---------------------FLQDQFVSNYAKSRFHPPGAVPGPGTDRSVPHTNGLLSPQQGED 476

  Fly   377 PSAPQ------TPTSLHSTSTGSVSTSVSSSSGGGIGSAPSTGCFSSSYAQSGFMSVDASPTASV 435
            |.||.      ||.:.....|.:.:...::...|...:.       .|||.:|..::        
 Frog   477 PGAPSPQRWFVTPANNRLDFTSASAYDAATDFAGNAATL-------LSYAAAGVKAL-------- 526

  Fly   436 FSYPSSWQSNGNYWNATSVPGPMPMNVCSGRNISSHNSPS--PTNGSPSYTTSSPSYTIHHLTPH 498
                                 |:|...|:.|.:..::.|:  .....|.|.|.|.|.    |...
 Frog   527 ---------------------PLPGGGCTARPLGYYSDPTGWGARSPPQYCTKSGSV----LPCW 566

  Fly   499 SHQYNMAQTDIYGTGVGVGGGAGTTGSPQAAYGAAAHQVYHPTPTSPTHQLYTNAVLNAPSALSY 563
            :....||.|:.|           .|||.:....||..:......|.|.....::.:...||..|.
 Frog   567 ATGGRMAATNPY-----------LTGSEEVESLAATDRSPLGEDTKPKDLSDSSWIETPPSIKSM 620

  Fly   564 SASGWHNGSGAEYGLYQNAAAAYYQP 589
            .:|        :.|:|:.|......|
 Frog   621 DSS--------DSGIYEQAKRRRLSP 638

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bynNP_524031.2 TBOX 86..268 CDD:238106 95/193 (49%)
tbr1NP_001072587.1 TBOX 205..398 CDD:238106 95/195 (49%)
T-box_assoc 420..675 CDD:292794 54/321 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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