DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment byn and tbx2a

DIOPT Version :9

Sequence 1:NP_524031.2 Gene:byn / 39349 FlyBaseID:FBgn0011723 Length:697 Species:Drosophila melanogaster
Sequence 2:XP_005165613.1 Gene:tbx2a / 573084 ZFINID:ZDB-GENE-990917-4 Length:690 Species:Danio rerio


Alignment Length:645 Identity:170/645 - (26%)
Similarity:249/645 - (38%) Gaps:174/645 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SHILSAVDPT--------TGLSGNVSGGGGGGGAGGGAGSGSPQHVTHNGHGHGHGLGGVAAVSG 60
            |..|:|..|:        .|||..::.....|.|..|         .|...||.|          
Zfish    27 SAFLAAAQPSFFPALTLPPGLSKPLADHALSGAAEAG---------LHAALGHHH---------- 72

  Fly    61 GGASVSGNGGH-RVVGGAGSPNELDRNLRISLDDRELWLRFQNLTNEMIVTKNGRRMFPVVKISA 124
                   ...| |...|.....:::.:.:::|:.:|||.:|..:..||::||:||||||..|:..
Zfish    73 -------QAAHLRSFKGLEPEEDVEDDPKVTLEAKELWDQFHKIGTEMVITKSGRRMFPPFKVRV 130

  Fly   125 SGLDPAAMYTVLLEFVQIDSHRWKYVNGEWVPGGKAEVPPSNPIYVHPESPNFGAHWMKEPISFA 189
            :|||..|.|.:|::.|..|..|:|:.|..|:..|||:......:|:||:||..|..||.:|::|.
Zfish   131 NGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMAKPVAFH 195

  Fly   190 KVKLTNK-TNGNGQIMLNSLHKYEPRVHLVRVG-------SEQRHVVTYPFPETQFIAVTAYQNE 246
            |:||||. ::.:|..:|||:|||:||.|:||..       |..|   ||.||||.|||||||||:
Zfish   196 KLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDILKLPYSTFR---TYVFPETDFIAVTAYQND 257

  Fly   247 EVTSLKIKYNPFAKAFLDAKERPDTLYPHDTHYGWLIPPPTHYTAAAAAVAAPPPLSIAQSHGLV 311
            ::|.|||..|||||.|            .||..|                .....|:..:.    
Zfish   258 KITQLKIDNNPFAKGF------------RDTGNG----------------RREKSLNFRKQ---- 290

  Fly   312 ASCPSVSSAESV-------GPSSGGSCDRYGRSLSSRSVAPTRTTPYSRPRVVSGSGSNGSAGNA 369
            .:.||:...:..       |.|...||::    .:.|....:.|.|.:.|...:.|..:.:...:
Zfish   291 LAMPSMRMYDDQCKVDRDGGDSDDSSCEQ----TTGRDSVHSPTGPATSPLKFTRSREDKNFNES 351

  Fly   370 SSTSPQ----------PPSAPQTPTS----------LHSTSTGSVSTS----------------- 397
            .:...|          |...||:|.|          |:....|..|.|                 
Zfish   352 DNELDQHDDGMIRVSSPEQRPQSPFSPRCEDRVKDRLNLEKKGDYSDSRKENDSAFSIRHLDKDK 416

  Fly   398 ----------VSSSSGGGIGSA---------------PSTGCFSSSYAQSGFMSVDASPTASVFS 437
                      .|......:|.:               ||.  ||:|:.||  :::........|:
Zfish   417 LDARNVKDQDSSKKEADSVGMSTVKDGFSPLMVQTENPSH--FSASHLQS--LALSGLHNQHFFN 477

  Fly   438 YPSSWQS----NGNYWNATSVPGPMPMNVCSGRNISSHNSPSP-TNGS-PSYTTSSPSYTIHHLT 496
            ..||.||    .|.:....|....|.|    |..::|.:..|. .||| .|.:||||:....||:
Zfish   478 PLSSGQSLLFHPGQFAMTPSAFSTMGM----GHLLASMSGASGLENGSLSSQSTSSPNPFPFHLS 538

  Fly   497 PHSHQYNMAQTDIYGTGVGVGGGAGTTGSPQAAYGAAAHQVYHPTPTSPTHQLYTNAVLN 556
            .|.         :...|:.:....|....|.....|||.........|....|..|..||
Zfish   539 QHM---------LASQGISMPTFGGLLPYPYTYMAAAAAAASALPAGSAASSLSRNPFLN 589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bynNP_524031.2 TBOX 86..268 CDD:238106 85/189 (45%)
tbx2aXP_005165613.1 TBOX 92..277 CDD:238106 86/199 (43%)
TBX 297..372 CDD:204975 11/78 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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