DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment byn and tbr1a

DIOPT Version :9

Sequence 1:NP_524031.2 Gene:byn / 39349 FlyBaseID:FBgn0011723 Length:697 Species:Drosophila melanogaster
Sequence 2:XP_693121.1 Gene:tbr1a / 564699 ZFINID:ZDB-GENE-060810-93 Length:585 Species:Danio rerio


Alignment Length:420 Identity:137/420 - (32%)
Similarity:190/420 - (45%) Gaps:100/420 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 RISLDDRELWLRFQNLTNEMIVTKNGRRMFPVVKISASGLDPAAMYTVLLEFVQIDSHRWKYVNG 152
            ::.|.:|.||.:|.....|||:||.||||||.:..:.||||||..|.:.::.:..|.:.|::..|
Zfish   144 QVYLCNRALWFKFHRHQTEMIITKQGRRMFPCLTFNVSGLDPAGHYNIAVDVILADPNHWRFQGG 208

  Fly   153 EWVPGGKAEV-PPSNPIYVHPESPNFGAHWMKEPISFAKVKLTN----KTNGNGQIMLNSLHKYE 212
            :|||.|||:. ...|.:|.||:|||.|||||::.|||.|:||||    .:|....|:|.|||||:
Zfish   209 KWVPCGKADTNVTGNRVYTHPDSPNTGAHWMRQEISFGKLKLTNNKGASSNNTQMIVLQSLHKYQ 273

  Fly   213 PRVHLVRVG-------SEQRHVVTYPFPETQFIAVTAYQNEEVTSLKIKYNPFAKAFLD------ 264
            ||||::.:.       |:...|.|:.|||||||:||||||.::|.|||.:|||||.|.|      
Zfish   274 PRVHVIEISKNEDEDTSDPDGVQTFTFPETQFISVTAYQNTDITQLKIDHNPFAKGFRDNYDTKY 338

  Fly   265 AKERPDTLYPHDTHYGWLIPPPTH--------------YTAAAAAVAAP---------------- 299
            :.:..|.|.|.|:.:..|:|...:              ||.:......|                
Zfish   339 SMDNTDRLTPSDSPHSQLLPSSRYAMPSALFQEQFVDSYTKSCFTTGTPERGLEFTNSIMTSNQT 403

  Fly   300 PPLSIAQSHGLVASCPSVSSAESVGPSSGGSCDRYGRSLSSRSVAPTRTTPYSRPRVVSGSGSN- 363
            ...|:........|.|||.|.|:         |....:|.|.:.|..:..|::.    :|..|| 
Zfish   404 QESSVTSGQRWFVSSPSVPSYEA---------DVDTAALLSYTTAGVKNLPFTS----TGGSSNS 455

  Fly   364 -------------GSAGNASST---------------SPQPPSAPQTPTSLHSTSTGSVSTSVSS 400
                         ||..|.|.|               |.||...|.....:..:|.| ||..:. 
Zfish   456 LDYYTSTAGWDSRGSLENGSKTISNLSGWVLDATLERSMQPNYLPDDRELMERSSLG-VSAELR- 518

  Fly   401 SSGGGIGSAPSTGCFSSSYAQSGFMSVDAS 430
                |.....||.    :..||...|||:|
Zfish   519 ----GKDVVDSTW----TDTQSSIKSVDSS 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bynNP_524031.2 TBOX 86..268 CDD:238106 91/197 (46%)
tbr1aXP_693121.1 TBOX 142..335 CDD:238106 91/190 (48%)
T-box_assoc 355..550 CDD:292794 42/209 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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