DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment byn and Tbx1

DIOPT Version :9

Sequence 1:NP_524031.2 Gene:byn / 39349 FlyBaseID:FBgn0011723 Length:697 Species:Drosophila melanogaster
Sequence 2:XP_006248681.1 Gene:Tbx1 / 360737 RGDID:1307734 Length:530 Species:Rattus norvegicus


Alignment Length:522 Identity:151/522 - (28%)
Similarity:205/522 - (39%) Gaps:150/522 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 AVSGGGASVSGNGGHRVVGGAGSP---NELDRNLRISLDDRELWLRFQNLTNEMIVTKNGRRMFP 118
            |.|...|...|.|..| ...|.:|   |....::.:.|:.:.||..|..|..||||||.||||||
  Rat   118 AASSSAAESEGPGASR-AAAAKAPVKKNPKVASVSVQLEMKALWDEFNQLGTEMIVTKAGRRMFP 181

  Fly   119 VVKISASGLDPAAMYTVLLEFVQIDSHRWKYV--NGEWVPGGKAEVPPSNP--IYVHPESPNFGA 179
            ..::...|:||.|.|.:|::||.:|..|::|.  :..|:..|||:  |:.|  ::.||:||..||
  Rat   182 TFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHSSSWLVAGKAD--PATPGRVHYHPDSPAKGA 244

  Fly   180 HWMKEPISFAKVKLTNK-TNGNGQIMLNSLHKYEPRVHLV----RVGSE---QRHVVTYPFPETQ 236
            .|||:.:||.|:||||. .:.||.|:|||:|:|:||.|:|    |..||   :.:..|:.|.||:
  Rat   245 QWMKQIVSFDKLKLTNNLLDDNGHIILNSMHRYQPRFHVVYVDPRKDSEKYAEENFKTFVFEETR 309

  Fly   237 FIAVTAYQNEEVTSLKIKYNPFAKAFLDAKERPDTLYPHDTHYGWLIPPPTHYTAAAAAVAAPPP 301
            |.|||||||..:|.|||..|||||.|.|..       |.|    |   |..|...|...|:|   
  Rat   310 FTAVTAYQNHRITQLKIASNPFAKGFRDCD-------PED----W---PRNHRPGALPLVSA--- 357

  Fly   302 LSIAQSHGLVASCPSVSSAE------------SVGPSSGGSCDRYGRSLSSRSVAPTRTTPYSRP 354
              .|:|...|||....:.|:            ..||::.|.. .:...|.:|.::|....|....
  Rat   358 --FARSRNPVASPTQPNGADKDVAEARREFDRDSGPAALGDA-THPPQLLARVLSPALPGPGGLV 419

  Fly   355 RVVSGSGSNGSAGNASSTSPQPP------SAPQTPTSLHSTSTGSVSTSVSSSSGGGIGSAPSTG 413
            .:..|||...|          ||      .||.....||.                         
  Rat   420 PLPGGSGGRHS----------PPHADLRLEAPGASEPLHH------------------------- 449

  Fly   414 CFSSSYAQSGFMSVDASPTASVFSYPSSWQSNGNYWNATSVPGPMPMNVCSGRNISSHNSPSPTN 478
                                ..:.||::  :..:|..|.|.|.|.|:....|.....|..|    
  Rat   450 --------------------HPYKYPAA--AYDHYLGAKSRPAPYPLPGLRGHGYHPHAHP---- 488

  Fly   479 GSPSYTTSSPSYTIHHLTPHSHQYNMAQTDIYGTGVGVGGGAGTTGSPQAAYGAAAHQVYHPTPT 543
                           |..||.|.:                  .......||..|||..||.....
  Rat   489 ---------------HAHPHHHHH------------------PAVNPAAAAAAAAAANVYSSAAA 520

  Fly   544 SP 545
            .|
  Rat   521 PP 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bynNP_524031.2 TBOX 86..268 CDD:238106 88/193 (46%)
Tbx1XP_006248681.1 TBOX 150..339 CDD:238106 88/190 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.