DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment byn and Tbx3

DIOPT Version :9

Sequence 1:NP_524031.2 Gene:byn / 39349 FlyBaseID:FBgn0011723 Length:697 Species:Drosophila melanogaster
Sequence 2:NP_853669.1 Gene:Tbx3 / 353305 RGDID:735203 Length:743 Species:Rattus norvegicus


Alignment Length:715 Identity:196/715 - (27%)
Similarity:279/715 - (39%) Gaps:181/715 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 GVAAVSGGGASVSGNGGHRVVGGA--GSP-------------------NELDRNLRISLDDRELW 97
            |.||:|..|| ::.....::||.|  |.|                   .:::.:.::.|:.:|||
  Rat    50 GAAALSLPGA-LAKPIMDQLVGAAETGIPFSSLGPQAHLRPLKTMEPEEDVEDDPKVHLEAKELW 113

  Fly    98 LRFQNLTNEMIVTKNGRRMFPVVKISASGLDPAAMYTVLLEFVQIDSHRWKYVNGEWVPGGKAEV 162
            .:|.....||::||:||||||..|:..||||..|.|.:|::.:..|..|:|:.|..|:..|||:.
  Rat   114 DQFHKRGTEMVITKSGRRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADP 178

  Fly   163 PPSNPIYVHPESPNFGAHWMKEPISFAKVKLTNKTN-----------------GN----GQIMLN 206
            .....:|:||:||..|..||.:.::|.|:||||..:                 ||    .|.:||
  Rat   179 EMPKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTLAFPSDHATWQGNYSFGTQTILN 243

  Fly   207 SLHKYEPRVHLVRVG-------SEQRHVVTYPFPETQFIAVTAYQNEEVTSLKIKYNPFAKAFLD 264
            |:|||:||.|:||..       |..|   ||.||||:|||||||||:::|.|||..|||||.|.|
  Rat   244 SMHKYQPRFHIVRANDILKLPYSTFR---TYLFPETEFIAVTAYQNDKITQLKIDNNPFAKGFRD 305

  Fly   265 A------KERPDTLYP-------HDTHYGWLIPPPTHYTA-AAAAVAAPPPLSIAQSHGLVASCP 315
            .      |.:..||..       |....|......:...| ...|.|:.|.:|...:..|...||
  Rat   306 TGNGRREKRKQLTLQSMRVFDERHKKETGTSDESSSEQAAFNCFAQASSPAVSTVGTSNLKDLCP 370

  Fly   316 S-------VSSAESVGPSSGGSCDRYGRSLSSRSVAPTRTTPYSRPRVVSGSGSNGSAGNASSTS 373
            |       ..|.|..||.   :||          .|...||....|     ....||....:...
  Rat   371 SEAESDAEAESKEEHGPE---ACD----------TAKISTTTAEEP-----GRDKGSPATRAQLF 417

  Fly   374 PQPPSAPQ--------TPTSLHSTSTGSVSTSVSSSSGGGIGSAPSTGCFSSSYAQSGFMS--VD 428
            |..||..:        :|.|.||.:|.|.||.|.     |.....|.|       :.|.:|  ||
  Rat   418 PAEPSRARDTARLDKASPDSRHSPATISSSTRVP-----GADEHRSPG-------REGPVSAKVD 470

  Fly   429 ---ASPTASVFSYPSSWQSNGNYWNATSVPGPMP-MNVCSGRNISSHNSPSPTNGSPSYTTSSPS 489
               |.|....|: |.|.|::.   .|....||:| :....|                  ......
  Rat   471 EARALPAKDAFA-PLSVQTDA---TAHLTQGPLPGLGFAPG------------------LAGQQF 513

  Fly   490 YTIHHLTPHSHQYNMA-------------QTDIYGTGVGVGG----GAGTTGSPQAAYGAAA--- 534
            :..|.|..|..|:.|.             ...:.|...||.|    ...:..:.|...||:|   
  Rat   514 FNGHPLFLHPGQFAMGGAFSSMAAGMGPLLATVSGASTGVSGLDSTAMASAAAAQGLSGASAATL 578

  Fly   535 --HQVYHPTPT-----SPTHQL--YTNAVLNAPSALSYSASGWHNGSGAEYGLYQNAAAAYYQPE 590
              |...|...:     ||...|  |....:.|.:|.|.:|:    .|......:.|..:...:..
  Rat   579 PFHLQQHVLASQGLAMSPFGSLFPYPYTYMAAAAAASSAAA----SSSVHRHPFLNLNSMRPRLR 639

  Fly   591 YIPLEIGYATHPLEPVDVSKTLDDPQAAMYK---PSDEQGSVITLECASSSLKSSHDIKIESSSL 652
            |.|..|     |:...|.|..|.....:|..   |.|.:.:|:....||.::.|..::...||:|
  Rat   640 YSPYSI-----PVPVPDSSSLLATALPSMASAAGPLDGKSAVLAASPASVAVDSGSELNSRSSTL 699

  Fly   653  652
              Rat   700  699

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bynNP_524031.2 TBOX 86..268 CDD:238106 88/215 (41%)
Tbx3NP_853669.1 T-box_TBX2_3-like 101..305 CDD:410314 86/206 (42%)
TBX 323..404 CDD:403708 21/98 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 371..467 29/125 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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