DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment byn and Tbx18

DIOPT Version :9

Sequence 1:NP_524031.2 Gene:byn / 39349 FlyBaseID:FBgn0011723 Length:697 Species:Drosophila melanogaster
Sequence 2:NP_001101643.1 Gene:Tbx18 / 315870 RGDID:1309856 Length:612 Species:Rattus norvegicus


Alignment Length:586 Identity:183/586 - (31%)
Similarity:261/586 - (44%) Gaps:152/586 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTTSHILSAVDPTTGLSGNVSGGGGGGGA-----------------GGGAGSGSPQHVTH----- 43
            :.|.....|||.        :|...||||                 ..|:.||..:..|.     
  Rat    41 LATEEAAGAVDD--------AGCSRGGGAREHRCTEADEDPAPPPPAAGSASGPARSCTDAERSC 97

  Fly    44 -----NGHGHGHGLGGVAAVSGGGASVSGNGGHRVVGGA--GSPNELDRNLRISLDDRELWLRFQ 101
                 .|......|.|.:.::..|.|..|:   .|.|.|  |:|....:..|:.|...|||.||.
  Rat    98 ASRGPAGSCEDGFLQGASPLASPGGSPKGS---PVPGLARPGTPLPAPQAPRVDLQGAELWKRFH 159

  Fly   102 NLTNEMIVTKNGRRMFPVVKISASGLDPAAMYTVLLEFVQIDSHRWKYV--NGEWVPGGKAEVPP 164
            .:..|||:||.||||||.:::..|||||...|.:.::.|.:|:.|::||  :.:|:..|.|:.|.
  Rat   160 EIGTEMIITKAGRRMFPAMRVKISGLDPHQQYYIAMDIVPVDNKRYRYVYHSSKWMVAGNADSPV 224

  Fly   165 SNPIYVHPESPNFGAHWMKEPISFAKVKLT-NKTNGNGQIMLNSLHKYEPRVHLVR--VGSEQRH 226
            ...:|:||:||..|..||::.|||.|:||| |:.:..|.|:|:|:|||:||||::|  .|.:...
  Rat   225 PPRVYIHPDSPASGETWMRQVISFDKLKLTNNELDDQGHIILHSMHKYQPRVHIIRKDCGDDLSP 289

  Fly   227 VVTYP---------FPETQFIAVTAYQNEEVTSLKIKYNPFAKAFLDAKE--------------- 267
            :...|         ||||.|..||||||:::|.|||..|||||.|.|:..               
  Rat   290 IKPVPSGEGVKAFSFPETVFTTVTAYQNQQITRLKIDRNPFAKGFRDSGRNRMGLEALVESYAFW 354

  Fly   268 RPD--TLYPHDTHYGWLIP--PPTHYTAAAAAV--------AAPPPLSIAQSHGLVASC------ 314
            ||.  ||...|      ||  |....|:::|.:        ||.|.|...      :||      
  Rat   355 RPSLRTLTFED------IPGIPKQGNTSSSALLPGTGNGVPAAHPHLLSG------SSCSSPAFH 407

  Fly   315 --PSVSSAESVGPSSGGSCDRYGRSLS--SRSVAPTRTTPYSRPRVVSGSGSNGSAGNASSTSPQ 375
              |:.|...|:.|:...:|.|.|.:|:  |.|:|.|    |:|            ..|.||.:..
  Rat   408 LGPNTSQLCSMAPADYSACARSGLALNRYSTSLAET----YNR------------LTNQSSETFA 456

  Fly   376 PPSAPQTPTSLHSTSTGSVSTSVSSSSGGGIGSAPSTGCFSSSYAQSGFMS-----VDASPTASV 435
            ||..|    |..|.|:.||:.|:..:.|... |.|.|   |.|...|| ||     :..||:::.
  Rat   457 PPRTP----SYVSVSSPSVNMSMGGTDGDTF-SCPQT---SLSMQISG-MSPQLQYIIPSPSSNA 512

  Fly   436 FSYPSSWQSNGNYWNATSVPGPMPMNVCS--GRNISSHNSP----SP---TNGSPSYTTSSPSYT 491
            |:...:.|  |:| |...:..|     |:  |.|.|:  ||    ||   .:...|:..||||.|
  Rat   513 FAANQTHQ--GSY-NTFRLHSP-----CALYGYNFST--SPKLAASPEKIVSSQGSFLGSSPSGT 567

  Fly   492 I 492
            :
  Rat   568 M 568

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bynNP_524031.2 TBOX 86..268 CDD:238106 85/210 (40%)
Tbx18NP_001101643.1 TBOX 145..340 CDD:238106 85/194 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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