DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment byn and Tbr1

DIOPT Version :9

Sequence 1:NP_524031.2 Gene:byn / 39349 FlyBaseID:FBgn0011723 Length:697 Species:Drosophila melanogaster
Sequence 2:NP_033348.2 Gene:Tbr1 / 21375 MGIID:107404 Length:681 Species:Mus musculus


Alignment Length:586 Identity:165/586 - (28%)
Similarity:250/586 - (42%) Gaps:163/586 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 GHRVVG------GAGSPNELDRNLRISLDDRELWLRFQNLTNEMIVTKNGRRMFPVVKISASGLD 128
            ||...|      .:..|..:....::.|.:|.|||:|.....|||:||.||||||.:..:.||||
Mouse   181 GHSYQGAPFYQFSSTQPGLVPGKAQVYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNISGLD 245

  Fly   129 PAAMYTVLLEFVQIDSHRWKYVNGEWVPGGKAEV-PPSNPIYVHPESPNFGAHWMKEPISFAKVK 192
            |.|.|.:.::.:..|.:.|::..|:|||.|||:. ...|.:|:||:|||.|||||::.|||.|:|
Mouse   246 PTAHYNIFVDVILADPNHWRFQGGKWVPCGKADTNVQGNRVYMHPDSPNTGAHWMRQEISFGKLK 310

  Fly   193 LTNK---TNGNGQ-IMLNSLHKYEPRVHLVRVG-------SEQRHVVTYPFPETQFIAVTAYQNE 246
            |||.   :|.||| ::|.|||||:||:|:|.|.       |:...|.|:.||||||||||||||.
Mouse   311 LTNNKGASNNNGQMVVLQSLHKYQPRLHVVEVNEDGTEDTSQPGRVQTFTFPETQFIAVTAYQNT 375

  Fly   247 EVTSLKIKYNPFAKAFLDAKERPDTLY-----------PHDTHYGWLIPPPTHYTAAAAAVAAPP 300
            ::|.|||.:|||||.|   ::..||:|           |:|:....::|      .|..|:|.  
Mouse   376 DITQLKIDHNPFAKGF---RDNYDTIYTGCDMDRLTPSPNDSPRSQIVP------GARYAMAG-- 429

  Fly   301 PLSIAQSHGLVASCPSVSSAESVGPSSGGSCDRYGRSLSSRSVAPTRTTPYSRPRVVSGSGSNGS 365
              |..|.. .|::..........|...|...|              |:.|:          :||.
Mouse   430 --SFLQDQ-FVSNYAKARFHPGAGAGPGPGTD--------------RSVPH----------TNGL 467

  Fly   366 AGNASSTSPQPPSAPQ----TP--------TSLHSTST---GSVSTSVSSSSGGGIGSAPSTGCF 415
            .....:..|..|| ||    ||        .|.:.|:|   |:.:|.:                 
Mouse   468 LSPQQAEDPGAPS-PQRWFVTPANNRLDFAASAYDTATDFAGNAATLL----------------- 514

  Fly   416 SSSYAQSGFMSVDASPTASVFSYPSSWQSNGNYWNATSVPGPMPMNVCSGRNISSHNSPSPTNG- 479
              |||.:|..::                             |:....|:||.:..:..||.... 
Mouse   515 --SYAAAGVKAL-----------------------------PLQAAGCTGRPLGYYADPSGWGAR 548

  Fly   480 SPSYTTSSPSYTIHHLTPHSHQYNMAQTDIYGTGVGVGGGAGTTGSPQAAYGAAAHQVYHPTPTS 544
            ||.....:.|.::....|:|   ..|...:.|....:|         :.|.|.||.:    :|.:
Mouse   549 SPPQYCGAKSGSVLPCWPNS---AAAAARMAGANPYLG---------EEAEGLAAER----SPLA 597

  Fly   545 PTHQ------LYTNAVLNAPSALSYSASGWHNGSGAEYGLYQNAAAAYYQPEYIPLEIGYATHPL 603
            |..:      |..::.:..||::....|       ::.|:|:.|......|...|  :..::.||
Mouse   598 PAAEDAKPKDLSDSSWIETPSSIKSIDS-------SDSGIYEQAKRRRISPADTP--VSESSSPL 653

  Fly   604 E 604
            :
Mouse   654 K 654

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bynNP_524031.2 TBOX 86..268 CDD:238106 95/193 (49%)
Tbr1NP_033348.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 43..83
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 108..127
TBOX 203..396 CDD:238106 95/195 (49%)
T-box_assoc 418..679 CDD:374412 61/346 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 447..483 11/60 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 597..655 12/67 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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