DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SdhAL and SDH1-1

DIOPT Version :10

Sequence 1:NP_648523.1 Gene:SdhAL / 39348 FlyBaseID:FBgn0036222 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_201477.1 Gene:SDH1-1 / 836809 AraportID:AT5G66760 Length:634 Species:Arabidopsis thaliana


Alignment Length:647 Identity:372/647 - (57%)
Similarity:467/647 - (72%) Gaps:25/647 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 RAGQHVTRSLL-GPNGSRLLQVSCVRDASCKDEYSLIDHKFDAIVIGAGGAGMRAGFGLAEKGFQ 71
            ||....|.||. |.:|||..:.........:..|:::||.:||:|:||||||:||..||:|.||.
plant    10 RAPASKTSSLFDGVSGSRFSRFFSTGSTDTRSSYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFN 74

  Fly    72 TAIISKLFPTRSHTVAAQGGVNAALSNMDKDDWKYHFYDTVKGSDWLGDQNAIHYMCREAERAVC 136
            ||.|:|||||||||||||||:||||.||.:|||::|.|||||||||||||:||.||||||.:||.
plant    75 TACITKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVI 139

  Fly   137 ELDMYGMPFSRKPDGKIYQRPFGGQTLDYGKGGVARRACAC-ADRTGHALIHTLYGQTLKHSDSC 200
            ||:.||:||||..:||||||.||||:||:||||.|.| ||| ||||||||:||||||.:||  :.
plant   140 ELENYGLPFSRTEEGKIYQRAFGGQSLDFGKGGQAYR-CACAADRTGHALLHTLYGQAMKH--NT 201

  Fly   201 HYFVDYFVLDLIM-SQGACVGCLAWKLDDGTFHRFLAKNTVVAAGGCGRVYFSTTAGHTCTGDGN 264
            .:||:||.|||:| |.|:|.|.:|..::|||.|||.:..|::|.||.||.|||.|:.||||||||
plant   202 QFFVEYFALDLLMASDGSCQGVIALNMEDGTLHRFRSSQTILATGGYGRAYFSATSAHTCTGDGN 266

  Fly   265 AWVSRQELPLMDMEFVQFHPTGIYGAGCLITEGVRGEGGFFLNCKGERFMERYAPKAKDLASRDV 329
            |.|:|..|||.|:||||||||||||||||||||.|||||...|.:||||||||||.|||||||||
plant   267 AMVARAGLPLQDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDV 331

  Fly   330 VARAMTMEVLAGNGCGPLKDHVHLQLHHIDAKIIKQRLPGIMVTARIFAKVDVTKEPVPVLPTVH 394
            |:|:||||:..|.|.||.|||::|.|:|:..:::|:|||||..||.|||.|||||||:|||||||
plant   332 VSRSMTMEIREGRGVGPHKDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVH 396

  Fly   395 YNMGGIPTDYKGRVVTIDENGKEQVVKGLYSCGETSCASVHGANRLGANSLLDLIIFGRVCALDI 459
            ||||||||:|.|.||||..:..:.|:.||.:.||.:|||||||||||||||||:::|||.||..:
plant   397 YNMGGIPTNYHGEVVTIKGDDPDAVIPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRV 461

  Fly   460 AANNCPGDKPPQVEDKATEKSLDNFKRLRCADGCIPTAVLRMELQRTMTKHAAVFREGKLLKEGL 524
            |..:.||:|...:|..|.||::....|||.::|.:||:.:|:.:||.|..:|||||..:.|:||.
plant   462 AEISKPGEKQKPLEKDAGEKTIAWLDRLRNSNGSLPTSTIRLNMQRIMQNNAAVFRTQETLEEGC 526

  Fly   525 LKVAELCEQFKDIKTTDRTMVWNSNLVETLELQNMLANAVHIITAMENRKESRGSHAREDFKTRV 589
            ..:.:..|.|.|::..||:|:|||:|:|||||:|:|.||...:.:.|.||||||:||||||..|.
plant   527 QLIDKAWESFGDVQVKDRSMIWNSDLIETLELENLLINASITMHSAEARKESRGAHAREDFTKRE 591

  Fly   590 DELDYGAPLAGQKKKPFEEHWRKHTMTFALGNKGCASIKYRPVVDTTLDSSVAPIPPAPRTY 651
            |         |:        |.|||:.:....|  ..:.||||...|||..:...||..|.|
plant   592 D---------GE--------WMKHTLGYWEDEK--VRLDYRPVHMDTLDDEIDTFPPKARVY 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdhALNP_648523.1 FAD_binding_2 37..651 CDD:481218 362/615 (59%)
SDH1-1NP_201477.1 PLN00128 1..634 CDD:177739 371/645 (58%)

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