DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5897 and obst-J

DIOPT Version :10

Sequence 1:NP_001356901.1 Gene:CG5897 / 39346 FlyBaseID:FBgn0036220 Length:343 Species:Drosophila melanogaster
Sequence 2:NP_649179.2 Gene:obst-J / 40202 FlyBaseID:FBgn0036940 Length:353 Species:Drosophila melanogaster


Alignment Length:252 Identity:48/252 - (19%)
Similarity:84/252 - (33%) Gaps:65/252 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 SQLSEICASLEPWNYVANPADCRRFVKCADLDDPTWGD--------------------------- 121
            :.:|.||...:||..:.:...|:||..|...||..:.:                           
  Fly    24 TDISAICRISDPWQMLPHKDHCQRFYVCTGDDDMPFQEFNCPAEYHFSKKLMICVPGACTDESVF 88

  Fly   122 ------------------------------CGVGQVFSNKKQTCLEEVAGCPQDNICSHMKDGSF 156
                                          |.||..|...::.||...........|. :.|.:.
  Fly    89 CGLTNSVERVQSDCTRYRQCLEGGSFAVAKCSVGNYFDPARRACLPVAISAAHQCSCV-LPDNAT 152

  Fly   157 VGDPKSCQIYYKCHNGFGTMLNCSVGRYFNRKTGNCQSWMPHYCSKDDEDNILTPPSTDHNICSK 221
            :.:|..|:.|::||:|...::.|..|.||:.:..:|   :|.:.....|...:.|..|:..:...
  Fly   153 LANPSDCETYFRCHSGQAELVQCPSGDYFDERVSSC---VPDHTGICLEKPTMPPTLTEQALAMD 214

  Fly   222 YYQRDRDGVQLLPDLMTCYGYYSCTSQFDVGKWSSCPWGLHFEWWSQRCGSPKDNSC 278
              :..|.|.:|.|....|..||.|..:..:.  ..||.|.:|:...:.|.....:.|
  Fly   215 --ECIRTGSRLAPHSRDCQRYYICAKKRVLE--MRCPRGQYFDVVRRYCALDLGSEC 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5897NP_001356901.1 ChtBD2 146..192 CDD:214696 12/45 (27%)
obst-JNP_649179.2 ChtBD2 <40..79 CDD:214696 6/38 (16%)
CBM_14 145..192 CDD:426342 14/50 (28%)
CBM_14 216..259 CDD:426342 12/44 (27%)

Return to query results.
Submit another query.