DRSC/TRiP Functional Genomics Resources

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Protein Alignment CycA and CYCA2;4

DIOPT Version :10

Sequence 1:NP_524030.2 Gene:CycA / 39340 FlyBaseID:FBgn0000404 Length:491 Species:Drosophila melanogaster
Sequence 2:NP_178153.1 Gene:CYCA2;4 / 844377 AraportID:AT1G80370 Length:461 Species:Arabidopsis thaliana


Alignment Length:445 Identity:142/445 - (31%)
Similarity:219/445 - (49%) Gaps:63/445 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 VIGGKAEKNALAPRANFAVLNGNNNVPRPAGKVQVFRDVRNLNVDENVEYGAKKSNVVPVVEQFK 97
            |:..|:::.||..:        ..|.|:   |..|.:|:.|:..:.:  |.:..|..|..::|.|
plant    49 VLRAKSKRTALDEK--------KANAPK---KRAVLKDITNVTCENS--YTSCFSVAVENIKQIK 100

  Fly    98 TFSVYEDNNDTQVAPSGKSLASLVDKENHDVKF-------GAGQKELVDYDLDSTPMSVTDVQSP 155
                    ...|.:.|.|..:|....:..|.|.       ||......|..|.:...|.:.:..|
plant   101 --------KGRQSSSSSKVASSSATSQVTDAKVEVVSNSAGASLSVFTDTSLGTNETSYSIIAKP 157

  Fly   156 MS---------VDRSILGVIQSSDISVGTETGVSPTGRVKELPPRNDRQRFLEVVQYQMDILEYF 211
            .|         |:||..|......:.:.::                |:...| ...|..||....
plant   158 SSRSPPRPFGTVERSCGGASSPKFVDIDSD----------------DKDPLL-CSLYAPDIYYNL 205

  Fly   212 RESEKKHRPKPLYMRR-QKDISHNMRSILIDWLVEVSEEYKLDTETLYLSVFYLDRFLSQMAVVR 275
            |.:|.|.||.|.:|.: |:|::..||.||:||||||||||.|..:||||:|:.:|.||....|.|
plant   206 RVAELKRRPFPDFMEKTQRDVTETMRGILVDWLVEVSEEYTLVPDTLYLTVYLIDWFLHGNYVER 270

  Fly   276 SKLQLVGTAAMYIAAKYEEIYPPEVGEFVFLTDDSYTKAQVLRMEQVILKILSFDLCTPTAYVFI 340
            .:|||:|...|.||:|||||:.|.:.||.|:||::||:.|||.||..:||..||.:.|||:..|:
plant   271 QRLQLLGITCMLIASKYEEIHAPRIEEFCFITDNTYTRDQVLEMESQVLKHFSFQIYTPTSKTFL 335

  Fly   341 NTY--AVLCDMPE---KLKYMTLYISELSLMEGETYLQYLPSLMSSASVALARHILGMEM--WTP 398
            ..:  |.....|.   :::::..|::||:||: ..:|::|||::::::|.||:..|....  |.|
plant   336 RRFLRAAQVSFPNQSLEMEFLANYLTELTLMD-YPFLKFLPSIIAASAVFLAKWTLNQSSHPWNP 399

  Fly   399 RLEEITTYKLEDLKTVVLHLCHTHKTAKELNTQAMREKYNRDTYKKVAMMESVEM 453
            .||..||||..|||..|..|.......|..:..::|.||.:|.:|.||:..|.|:
plant   400 TLEHYTTYKASDLKASVHALQDLQLNTKGCSLNSIRMKYRQDKFKSVAVFSSGEL 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CycANP_524030.2 CYCLIN_CCNA_rpt1 202..329 CDD:410208 64/127 (50%)
Cyclin_C 334..450 CDD:397230 39/122 (32%)
CYCA2;4NP_178153.1 CYCLIN_AtCycA_like_rpt1 190..325 CDD:410265 66/135 (49%)
CYCLIN_AtCycA-like_rpt2 329..443 CDD:410210 36/114 (32%)

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