Protein Alignment CycA and Ccnjl

DIOPT Version :10

• Sequence 1: NP_524030.2
• Gene: CycA / 39340
• FlyBaseID: FBgn0000404
• Length: 491
• Species: Drosophila melanogaster
• Sequence 2: NP_001032862.2
• Gene: Ccnjl / 303059
• RGDID: 1561384
• Length: 387
• Species: Rattus norvegicus
• Alignment Length: 293
• Identity: 69/293 - (23%)
• Similarity: 129/293 - (44%)
• Gaps: 56/293 - (19%)

  Fly   227 RQKDI------SHN----MRSILIDWLVEVSEEYKLDTETLYLSVFYLDRFLSQMAVVRSK-LQL 280
            |:|::      :|:    .|...:|.|..:|....|.....:|:::.||.|:.|..|..|| |..
  Rat    19 REKELKLPTFRAHSPLLKSRRFFVDILTLLSRHCHLCPSARHLAIYLLDHFMDQYNVTTSKQLYT 83

  Fly   281 VGTAAMYIAAKYE--EIYPPEVGE-----FVFLTDDSYTKAQVLRMEQVILKILSFDLCTPTAYV 338
            |..:.:.:|:|:|  |...|::.:     .:...:.|.||.::|..|.::|:..|:|||.||...
  Rat    84 VAVSCLLLASKFEDREDRVPKLDQINSTRILSSHNFSLTKKELLTTELLLLEAFSWDLCLPTPAH 148

  Fly   339 FINTYAVLCDMPEK------------------LKYMTLYISELSLMEGETYLQYLPSLMSSASVA 385
            |:: |.:|..:.:|                  ||....|..|::|.: ..:.::.||::::|.|.
  Rat   149 FLD-YYLLASISQKDHHCHTWPTTCLRKTKECLKEYAHYFLEVTLQD-HIFYKFQPSVVAAACVG 211

  Fly   386 LARHILGME-MWTPRLEEITTYKLEDLKTVVLHLCHTH----KTAKELNTQAM-----------R 434
            .:|..|.:. .||..|:.::.|.||.|.|.:..|...:    |.|..:.:||:           :
  Rat   212 ASRICLQLSPYWTRDLQRVSNYSLEHLSTCIEILLVAYDNVLKDAVAVKSQALAMVPSSSSAPTQ 276

  Fly   435 EKYNRDTYKKVAMMESVEMS--KDDFDQLCEAY 465
            ..:...||..::......::  :.....||.||
  Rat   277 VLFQPPTYPSLSQPPPTTLAQFQSPAQDLCLAY 309

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CycA	NP_524030.2	CYCLIN_CCNA_rpt1	202..329	CDD:410208	29/119 (24%)
		Cyclin_C	334..450	CDD:397230	32/149 (21%)
Ccnjl	NP_001032862.2	CYCLIN_CCNJ-like_rpt1	32..120	CDD:410231	20/87 (23%)
		CYCLIN_CCNJ-like_rpt2	144..245	CDD:410232	25/102 (25%)