DRSC/TRiP Functional Genomics Resources

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Protein Alignment CycA and ccnf

DIOPT Version :10

Sequence 1:NP_524030.2 Gene:CycA / 39340 FlyBaseID:FBgn0000404 Length:491 Species:Drosophila melanogaster
Sequence 2:NP_996931.1 Gene:ccnf / 266981 ZFINID:ZDB-GENE-021030-2 Length:764 Species:Danio rerio


Alignment Length:289 Identity:74/289 - (25%)
Similarity:144/289 - (49%) Gaps:31/289 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 ILEYFRESEKKHRPKPLYMRRQKDISHNMRSILIDWLVEVSEEYKLDTETLYLSVFYLDRFLSQM 271
            :.::|:......|.:| :::.| ||: ..|.||:||||||:......::.|::::..:||:|...
Zfish   283 VSQFFQTGPSALRYQP-HLQGQ-DIT-TKRYILVDWLVEVTTTKDFSSQVLHVTISCVDRYLHLR 344

  Fly   272 AVVRSKLQLVGTAAMYIAAKY--EEIYPPEVGEFVFLTDDSYTKAQVLRMEQVILKILSFDLCTP 334
            :|.:::|||:|.|.|.|..::  :||.  .:.|.|:|||::|....::.|...::.:|...:.||
Zfish   345 SVPKAQLQLLGIACMVICTRFISKEIL--TIREAVWLTDNTYQYEDLVHMMGEVISVLDGKIRTP 407

  Fly   335 TAYVFINTYAVLCDMPEKLKYMTLYISELSLMEGETYLQYLPSLMSSASVALARHILG-MEMWTP 398
            |...:......|..:..:..::..||.||||:.....:.. |:.::||.:.|.|.:.. :.:|..
Zfish   408 TVLDYGEVLLSLLPVERRTAHLFSYICELSLLCSPATVPG-PARLASAILLLTRALHNYVPVWPV 471

  Fly   399 RLEEITTYKLEDLKTVVLHL---CHTHKTAKE---LNTQAMREKYNRDTYKKVAMMESVEMSKD- 456
            :|||.|.:..:||.:..|.|   |......|:   ::...:::::..|:|:::        ||| 
Zfish   472 QLEENTGFSKQDLVSCALTLYIKCFGQDVPKDYRHVSLTGVKQRFEDDSYQQI--------SKDT 528

  Fly   457 --DFDQLCEAYNCKQKEDEHQQPDINTKS 483
              .|.:||......:.|     |.:...|
Zfish   529 VMGFKELCHVLEVPEVE-----PQVEVSS 552

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CycANP_524030.2 CYCLIN_CCNA_rpt1 202..329 CDD:410208 37/123 (30%)
Cyclin_C 334..450 CDD:397230 27/122 (22%)
ccnfNP_996931.1 Nuclear localization signal 1. /evidence=ECO:0000250|UniProtKB:P41002 19..27
F-box_FBXO1 40..81 CDD:438854
CYCLIN_CCNF_rpt1 306..400 CDD:410225 30/96 (31%)
D box 1. /evidence=ECO:0000250|UniProtKB:P41002 309..312 1/2 (50%)
CYCLIN_CCNF_rpt2 428..539 CDD:410226 30/119 (25%)
Nuclear localization signal 2. /evidence=ECO:0000250|UniProtKB:P41002 570..575
PEST 583..738
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 662..754
Blue background indicates that the domain is not in the aligned region.

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