DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpL10Ab and rplA

DIOPT Version :10

Sequence 1:NP_648514.1 Gene:RpL10Ab / 39338 FlyBaseID:FBgn0036213 Length:217 Species:Drosophila melanogaster
Sequence 2:NP_418411.1 Gene:rplA / 948483 ECOCYCID:EG10864 Length:234 Species:Escherichia coli


Alignment Length:229 Identity:52/229 - (22%)
Similarity:98/229 - (42%) Gaps:44/229 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KVSRDTLYEGVN---GLLEASAKKKRGFLETVELQIGLKNYDPQK-DKRFSGTVKLKHIPRPKMK 64
            ||.....|: :|   .||:..|..|  |:|:|::.:.| ..|.:| |:...|...|.|.....::
E. coli    14 KVDATKQYD-INEAIALLKELATAK--FVESVDVAVNL-GIDARKSDQNVRGATVLPHGTGRSVR 74

  Fly    65 VCILGDQQHCDEAKANNVDFMDAEALKKLNKNKKLVKKLAKSYDAFLASES---LIKQIPRLLGP 126
            |.:.....:.:.|||...:.:..|.|      ...:||...::|..:||..   ::.|:.::|||
E. coli    75 VAVFTQGANAEAAKAAGAELVGMEDL------ADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGP 133

  Fly   127 GLNKAGKFPALLSHQESMIGKI-----EEVKST----IKFQMKKVLCLSVAVGHVGMKSDELAQN 182
                .|..|      ...:|.:     |.||:.    ::::..|...:...:|.|...:|:|.:|
E. coli   134 ----RGLMP------NPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKEN 188

  Fly   183 VNLSINFLVSLLKKNWQNVRSLHVK-----SSMG 211
            :..   .||:|.|......:.:::|     ::||
E. coli   189 LEA---LLVALKKAKPTQAKGVYIKKVSISTTMG 219

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL10AbNP_648514.1 Ribosomal_L1 3..217 CDD:469720 52/229 (23%)
rplANP_418411.1 RplA 1..226 CDD:439851 52/229 (23%)

Return to query results.
Submit another query.