DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cubn2 and Semp1

DIOPT Version :10

Sequence 1:NP_729748.3 Gene:Cubn2 / 39334 FlyBaseID:FBgn0259140 Length:3613 Species:Drosophila melanogaster
Sequence 2:NP_609756.1 Gene:Semp1 / 34914 FlyBaseID:FBgn0028944 Length:251 Species:Drosophila melanogaster


Alignment Length:105 Identity:25/105 - (23%)
Similarity:41/105 - (39%) Gaps:23/105 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly  2486 LNLLNLSNIRVVKRNDTNRSFMQIGRLESMAHFSFYNDANSLSKIAEFRIDGGYNGSGIIESTDN 2550
            |::|...:..|.:..|...| :|...:....:.:|.|:.||   .|....|.||:    .||..:
  Fly   147 LHVLGFEHQHVSQNRDQYVS-IQWKNINPQYNINFVNNDNS---TAWHDFDEGYD----YESVMH 203

  Fly  2551 YMLVVVMTNQLDLSATPLRARYSSSEPTVCPPNIGDQATG 2590
            |:              | ||...:.:||:.|...|.:..|
  Fly   204 YV--------------P-RAFSRNGQPTIVPLREGAENMG 228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cubn2NP_729748.3 cubilin_NTD 38..141 CDD:412063
EGF_CA 156..190 CDD:238011
EGF_CA 192..233 CDD:238011
EGF_CA 290..328 CDD:214542
EGF_CA 330..374 CDD:214542
EGF 427..455 CDD:394967
EGF_CA 462..496 CDD:238011
CUB 503..619 CDD:238001
CUB 624..738 CDD:238001
CUB 745..854 CDD:238001
CUB 857..963 CDD:238001
CUB 1066..1179 CDD:238001
CUB 1185..1293 CDD:238001
CUB 1303..1406 CDD:238001
CUB 1411..1523 CDD:238001
CUB 1530..1648 CDD:238001
CUB 1754..1862 CDD:238001
CUB 1979..2091 CDD:238001
CUB 2210..2321 CDD:238001
CUB 2327..2441 CDD:238001
CUB 2688..2782 CDD:412131
CUB 2810..2911 CDD:238001
CUB 3029..3143 CDD:238001
CUB 3169..3249 CDD:412131
CUB 3499..3607 CDD:238001
Semp1NP_609756.1 ZnMc_astacin_like 55..245 CDD:239807 25/105 (24%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.