DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42255 and nas-27

DIOPT Version :9

Sequence 1:NP_729748.3 Gene:CG42255 / 39334 FlyBaseID:FBgn0259140 Length:3613 Species:Drosophila melanogaster
Sequence 2:NP_493926.2 Gene:nas-27 / 188809 WormBaseID:WBGene00003545 Length:428 Species:Caenorhabditis elegans


Alignment Length:405 Identity:79/405 - (19%)
Similarity:122/405 - (30%) Gaps:159/405 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   495 TCSHQRFFCGVTIRGPSGQLHYPPNTADGDYQADERCPFIIRTNRNMVLNLTFT-------QFQL 552
            :|:...|.....|....|..|        ::...:|..||.....|:..||||.       |...
 Worm   140 SCTDHTFVVAHEIAHTLGFYH--------EHARGDRDQFISIDYSNVNPNLTFAFAKESEKQLDH 196

  Fly   553 EDSADCTADFLQLHDGNSLSSRLIGRFCGSRLPMTNGSVITTQEQVFFWFRSDNQTQGKG----- 612
            :::|         ::..|:....:.:|..:    ||..||..::|.|        .|..|     
 Worm   197 QEAA---------YEYGSVMHYSVDQFAVN----TNRPVIYARDQKF--------AQAMGNRMRA 240

  Fly   613 -------FHVIWNSLPFSCGETINLTSTQTGVLRSPGYPGQARPELDCRWQLTAPFGYRLLLRFY 670
                   .:|::|... .|..|:|  ..|.|     |||..:    ||. |...|.|:       
 Worm   241 TFQDVSRMNVLYNC
HE-RCANTLN--RCQQG-----GYPAPS----DCS-QCVCPDGF------- 285

  Fly   671 DISLGSSEASAGNCSQDSLIVYDSDRQLLRACQSIQPPPVYSSSNSLRLDFHTDAIRSDSSFQMH 735
                      .||                 .|::|:...|....||                   
 Worm   286 ----------GGN-----------------FCETIEAHSVGQKDNS------------------- 304

  Fly   736 YEVVPGHPGCGGV----------YTESRGRI---SGYMNFEVCLYLIEQPRGTQVKLVIDRVSLV 787
                    .||||          |...|.|:   |.....|.|.:.|...:|..:::.|..:...
 Worm   305 --------DCGGVLWASETSQTFYGAVRTRVHSNSVLPTPEHCFWHIRASQGKSIEIQIKNIISP 361

  Fly   788 QSLSCHYLKIEI-FDGRSTDAPLLRRICGSH----------EESELEPIISIGNVILVRYEYALS 841
            .|:||.:..:|: ....:...|  |..|..|          .:|| .|:..||  ...||:|.  
 Worm   362 CSMSCSFNALELKLSNFTMTGP--RFCCDEHIYNRYSQPKVFQSE-GPLAVIG--AYARYDYL-- 419

  Fly   842 GVRLSKSFDLTYTRV 856
                  .|::.|..|
 Worm   420 ------DFNIEYRAV 428

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG42255NP_729748.3 EGF_CA 156..190 CDD:238011
EGF_CA 192..233 CDD:238011
EGF_CA 290..328 CDD:214542
EGF_CA 330..374 CDD:214542
EGF 427..455 CDD:278437