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Protein Alignment Cubn2 and nas-27

DIOPT Version :10

Sequence 1:	NP_729748.3	Gene:	Cubn2 / 39334	FlyBaseID:	FBgn0259140	Length:	3613	Species:	Drosophila melanogaster
Sequence 2:	NP_493926.2	Gene:	nas-27 / 188809	WormBaseID:	WBGene00003545	Length:	428	Species:	Caenorhabditis elegans

Alignment Length:	405	Identity:	79/405 - (19%)
Similarity:	122/405 - (30%)	Gaps:	159/405 - (39%)

- Green bases have known domain annotations that are detailed below.

  Fly   495 TCSHQRFFCGVTIRGPSGQLHYPPNTADGDYQADERCPFIIRTNRNMVLNLTFT-------QFQL 552
            :|:...|.....|....|..|        ::...:|..||.....|:..||||.       |...
Worm   140 SCTDHTFVVAHEIAHTLGFYH--------EHARGDRDQFISIDYSNVNPNLTFAFAKESEKQLDH 196

  Fly   553 EDSADCTADFLQLHDGNSLSSRLIGRFCGSRLPMTNGSVITTQEQVFFWFRSDNQTQGKG----- 612
            :::|         ::..|:....:.:|..:    ||..||..::|.|        .|..|
Worm   197 QEAA---------YEYGSVMHYSVDQFAVN----TNRPVIYARDQKF--------AQAMGNRMRA 240

  Fly   613 -------FHVIWNSLPFSCGETINLTSTQTGVLRSPGYPGQARPELDCRWQLTAPFGYRLLLRFY 670
                   .:|::|... .|..|:|  ..|.|     |||..:    ||. |...|.|:
Worm   241 TFQDVSRMNVLYNCHE-RCANTLN--RCQQG-----GYPAPS----DCS-QCVCPDGF------- 285

  Fly   671 DISLGSSEASAGNCSQDSLIVYDSDRQLLRACQSIQPPPVYSSSNSLRLDFHTDAIRSDSSFQMH 735
                      .||                 .|::|:...|....||
Worm   286 ----------GGN-----------------FCETIEAHSVGQKDNS------------------- 304

  Fly   736 YEVVPGHPGCGGV----------YTESRGRI---SGYMNFEVCLYLIEQPRGTQVKLVIDRVSLV 787
                    .||||          |...|.|:   |.....|.|.:.|...:|..:::.|..:...
Worm   305 --------DCGGVLWASETSQTFYGAVRTRVHSNSVLPTPEHCFWHIRASQGKSIEIQIKNIISP 361

  Fly   788 QSLSCHYLKIEI-FDGRSTDAPLLRRICGSH----------EESELEPIISIGNVILVRYEYALS 841
            .|:||.:..:|: ....:...|  |..|..|          .:|| .|:..||  ...||:|.
Worm   362 CSMSCSFNALELKLSNFTMTGP--RFCCDEHIYNRYSQPKVFQSE-GPLAVIG--AYARYDYL-- 419

  Fly   842 GVRLSKSFDLTYTRV 856
                  .|::.|..|
Worm   420 ------DFNIEYRAV 428

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.