DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ccdc56 and coa3b

DIOPT Version :9

Sequence 1:NP_996062.3 Gene:Ccdc56 / 39320 FlyBaseID:FBgn0261353 Length:87 Species:Drosophila melanogaster
Sequence 2:NP_001191179.2 Gene:coa3b / 335493 ZFINID:ZDB-GENE-030131-7433 Length:115 Species:Danio rerio


Alignment Length:92 Identity:29/92 - (31%)
Similarity:52/92 - (56%) Gaps:13/92 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SASEQGPKIKYGESAPKLD--KAQLQFMKLIEEQNLDRVQKL-------KRIRRNNLLTAGALGV 57
            |.:|.|.:::    |...|  .|:.:.:..:::|.|.|.|:|       |::||.||:|...:|.
Zfish    15 SLNEHGKRME----AKTRDACSAEPKSLTPLQKQMLKRQQELEYWKLHSKQVRRCNLITGLTIGA 75

  Fly    58 SVLAIYGYSIFSVQQEKFLDDFEEPKK 84
            .|:.::.|:|.||:|||.:|:.:|..|
Zfish    76 FVVGLFSYTILSVKQEKIIDEIDEEAK 102

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ccdc56NP_996062.3 Coiled-coil_56 1..86 CDD:286851 29/92 (32%)
coa3bNP_001191179.2 Coiled-coil_56 <36..102 CDD:286851 22/65 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 54 1.000 Domainoid score I11238
eggNOG 1 0.900 - - E1_KOG4782
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 54 1.000 Inparanoid score I5444
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006165
OrthoInspector 1 1.000 - - otm26078
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR15642
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.960

Return to query results.
Submit another query.