DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dnai2 and Dnai4

DIOPT Version :10

Sequence 1:NP_001261723.1 Gene:Dnai2 / 39318 FlyBaseID:FBgn0036195 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_001019957.1 Gene:Dnai4 / 313417 RGDID:1311027 Length:803 Species:Rattus norvegicus


Alignment Length:457 Identity:103/457 - (22%)
Similarity:182/457 - (39%) Gaps:71/457 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 ARVHFEDKDEVVFTENSNPELVKSYILKNPVDRVTQ---YAGQTSL-SVANTERATYKSTGITHN 74
            |:.|   :||    |:::.:::||       |::.|   |..:..: :|...:.|.|:...|.  
  Rat   332 AKSH---EDE----EDNSEKILKS-------DKLHQDLFYMERVLMENVFQPKLAAYRQLPIY-- 380

  Fly    75 EGGWPKDINMHDPEQTVRYKRKIEKDENYITQVMNLTKPMEHYIHQNNAVNIYENYFENLDPAPL 139
                 |::....||:.::...|:.:||        :.|..|..:.....:.|...  ::..||.|
  Rat   381 -----KELEPGQPEEDLQVVNKVTEDE--------VKKDEEEEMETELEIEITTE--QSTIPANL 430

  Fly   140 PEPCKSRTVNVYRDPNPIKVPVKHLSWSPDGGIKMAVSHCDMRFQGDKSNQKCNSYIWEVENPNE 204
             |...|.:.::.:..|     |..|||:......:||.:.:..|:..|....|   .|.::||..
  Rat   431 -ERLWSFSCDLTKGLN-----VSSLSWNKANSDLLAVGYGNFGFKEQKRGMAC---CWSIKNPMW 486

  Fly   205 PFLTLEPKVPCVCLEYNQKDPTSLVSGMYNGQVAAWDTR-HGKLPVM-ISEREVCHRDPVNSVLW 267
            |....:.......::::...|..|..|.:||.||.::.: :...||: .||....|..||..|.|
  Rat   487 PERIYQSPYGVTSVDFSISSPNLLAVGYHNGTVAIYNVQSNHNTPVLDSSESPQKHLGPVWQVQW 551

  Fly   268 NNSKSGTE-------FFSGGSDGQVLWWDTRK------------LTEPLDRLLMDPVKSDDQDLS 313
            .....||.       ..|..:||::..|..||            .|....:..::..|..:..:|
  Rat   552 IEQDRGTTGDDRREILVSISADGRISKWVIRKGLDCHDLMHLKRTTVTSSKKGIEKEKKGEALIS 616

  Fly   314 RSYGISVLEYETTIPTRFMAGTEMGMLFSCNRKGKTPTEKIQIRMMCHLGPVYAITRNPAFVKNF 378
            |........:.|.....::||||.|::..|:   .:..|:.......|.||||.:|.||.....|
  Rat   617 RQAPGMCFAFHTKDTNIYLAGTEEGLIHKCS---CSYNEQYLETYRGHKGPVYKVTWNPFCPDVF 678

  Fly   379 LTV-GDWCARIWSEDCRESSIIWTKSSSSMLTDGAWSYTKVSQFFITRMDGVLDTWDLLQQQNEP 442
            |:. .||...||.:| ..........::.::.|.||| .|.:..|....:..::.|||.....:|
  Rat   679 LSCSADWGVMIWHQD-NVKPFFTFYPTTYVVYDVAWS-PKSAYIFAAANENRVEIWDLQISTLDP 741

  Fly   443 VL 444
            ::
  Rat   742 LI 743

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dnai2NP_001261723.1 WD40 212..469 CDD:475233 61/255 (24%)
WD40 repeat 215..254 CDD:293791 10/40 (25%)
WD40 repeat 262..304 CDD:293791 12/60 (20%)
WD40 repeat 318..355 CDD:293791 8/36 (22%)
WD40 repeat 365..401 CDD:293791 12/36 (33%)
WD40 repeat 408..433 CDD:293791 6/24 (25%)
WD40 repeat 162..208 CDD:293791 12/45 (27%)
Dnai4NP_001019957.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..41
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 88..109
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 143..163
WD40 repeat 447..492 CDD:293791 12/47 (26%)
WD 1. /evidence=ECO:0000255 492..532 7/39 (18%)
WD40 496..778 CDD:475233 61/253 (24%)
WD40 repeat 497..541 CDD:293791 11/43 (26%)
WD 2. /evidence=ECO:0000255 541..589 13/47 (28%)
WD40 repeat 547..616 CDD:293791 12/68 (18%)
WD 3. /evidence=ECO:0000255 616..656 10/42 (24%)
WD40 repeat 621..659 CDD:293791 8/40 (20%)
WD 4. /evidence=ECO:0000255 660..700 15/40 (38%)
WD40 repeat 666..701 CDD:293791 11/35 (31%)
WD 5. /evidence=ECO:0000255 703..742 9/39 (23%)
WD40 repeat 708..740 CDD:293791 9/32 (28%)
WD 6. /evidence=ECO:0000255 748..787
WD40 repeat 750..779 CDD:293791
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.