DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dnai2 and dnai4

DIOPT Version :9

Sequence 1:NP_001261723.1 Gene:Dnai2 / 39318 FlyBaseID:FBgn0036195 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_001106504.1 Gene:dnai4 / 100127694 XenbaseID:XB-GENE-5890871 Length:795 Species:Xenopus tropicalis


Alignment Length:524 Identity:115/524 - (21%)
Similarity:208/524 - (39%) Gaps:87/524 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 NPELVKSYILKNPVDRVTQ---------YAGQTSLSVANTERATYKSTGITHNEGGWP----KDI 82
            :||   |..:|..|||.|:         ...:.:.||.:..||...|:..|..| |.|    .|.
 Frog   294 SPE---SLTVKETVDRATESKNISTSRSSESRGTRSVNSLGRADSFSSSATDIE-GLPLARIPDE 354

  Fly    83 NMHDPEQTVRYKRKIEKDENYITQVMNLTKPMEHYIHQNNAVNIYENYFENLD-----PAPLPEP 142
            ...|.|:.::.: |.::|..::.:|: :....:..:.....:.:..::.|:.|     .:.:..|
 Frog   355 AEPDSEEILKLE-KFQQDLFFMERVV-VENTFQSRLAAYRQLPVIADHEEDEDKISAVSSNIMSP 417

  Fly   143 CKSR----TVNVYRDPNPIKVPVKHLSWSPDGGIKMAVSHCDMRFQGDKSNQKCNSYIWEVENPN 203
            ..:|    ..:|.:..|     |..:||:......:||.:....|...|....|   .|.::|..
 Frog   418 SLNRLWSFACDVTKGHN-----VSSISWNKKNSDLLAVGYGQFGFTEQKGGMAC---CWSLKNIM 474

  Fly   204 EPFLTLEPKVPCVC----LEYNQKDPTSLVSGMYNGQVAAWDTRHGK-LPVM-ISEREVCHRDPV 262
            .|    |....|.|    ::::...|..|..|||||.||.::.::.: .||: .|:....|..||
 Frog   475 WP----ERIFHCECGVTAVDFSAVHPNLLAVGMYNGTVAIYNVQNNEDFPVLDSSDNPNKHTSPV 535

  Fly   263 NSVLW-------NNSKSGTEFFSGGSDGQVLWWDTRKLTEPLDRLLM-------------DPVKS 307
            ..:.|       .....|....|..:||::..|..||..:..|.:.:             :..|.
 Frog   536 WQLKWIEHDRGNLGDDKGEILVSVCADGRITRWHIRKGLDCNDLMKLKRTGSEKSKKSSNEKEKK 600

  Fly   308 DDQDLSRSYGISVLEYETTIPTRFMAGTEMGMLFSCNRKGKTPTEKIQIRMMCHLGPVYAITRNP 372
            .:..:||.......::.......::||||.|.:..|:   .:..|:.......|.||||.|..:|
 Frog   601 GEAFISRQAPGMCFDFLPKDSNIYLAGTEEGHIHKCS---CSYNEQFLDTYRGHKGPVYKIAWSP 662

  Fly   373 AFVKNFLTV-GDWCARIWSEDCRESSIIWTKSSSSMLTDGAWSYTKVSQFFITRMDGVLDTWDLL 436
            .....||:. .|||..:|.:|.. |.|:...::::.:.|..||.:....|.....:.| :.|||.
 Frog   663 FCPDVFLSCSADWCIHLWQQDVL-SPILTFSNTTNAVYDIMWSPSSALMFGAVTENRV-EIWDLG 725

  Fly   437 QQQNEPVLT------VKVCDEPLYCVRTNENGKFVSCGSQLGATFLVEVSDNMVMSAKNDKPLLT 495
            ....:|::.      ||: ...|:...||    .|..|...|...:.|:.:  |.|:|:.:  :.
 Frog   726 TSTIDPLIVNEANPGVKL-TSILFAKNTN----CVLIGDSDGQVNVYELRN--VSSSKDSE--VN 781

  Fly   496 AMFE 499
            |:::
 Frog   782 ALYD 785

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dnai2NP_001261723.1 WD40 <160..482 CDD:225201 82/354 (23%)
WD40 repeat 162..208 CDD:293791 10/45 (22%)
WD40 212..469 CDD:295369 67/289 (23%)
WD40 repeat 215..254 CDD:293791 14/44 (32%)
WD40 repeat 262..304 CDD:293791 10/61 (16%)
WD40 repeat 318..355 CDD:293791 7/36 (19%)
WD40 repeat 365..401 CDD:293791 13/36 (36%)
WD40 repeat 408..433 CDD:293791 5/24 (21%)
dnai4NP_001106504.1 WD40 359..782 CDD:225201 95/450 (21%)
WD40 431..768 CDD:295369 82/358 (23%)
WD40 repeat 435..480 CDD:293791 12/51 (24%)
WD40 repeat 487..523 CDD:293791 11/35 (31%)
WD40 repeat 613..650 CDD:293791 7/39 (18%)
WD40 repeat 656..693 CDD:293791 12/37 (32%)
WD40 repeat 698..736 CDD:293791 9/38 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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