DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sugb and GDH2

DIOPT Version :9

Sequence 1:NP_648493.3 Gene:Sugb / 39314 FlyBaseID:FBgn0036191 Length:604 Species:Drosophila melanogaster
Sequence 2:NP_010066.1 Gene:GDH2 / 851311 SGDID:S000002374 Length:1092 Species:Saccharomyces cerevisiae


Alignment Length:614 Identity:117/614 - (19%)
Similarity:206/614 - (33%) Gaps:195/614 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 PKVEFHCHQGVSDIPRFCSEYG--------------------ECVERNLERYYGNRTLECELNCE 145
            ||...:.|.|...|..|.:..|                    |.|| ||:|...|.||..:....
Yeast   385 PKEAIYAHIGAIFINHFVNRLGSDYQNLLSQITIKRNDTTLLEIVE-NLKRKLRNETLTQQTIIN 448

  Fly   146 AQPFMWDIVCEDWLKNNTENCAANRTNTQMEFGASITMQKIE------NDGSCMFFM---IPHDQ 201
            .....:.|:.:.: ||..:....:.:...||  .:::.|::|      ||.....::   ||:|.
Yeast   449 IMSKHYTIISKLY-KNFAQIHYYHNSTKDME--KTLSFQRLEKVEPFKNDQEFEAYLNKFIPNDS 510

  Fly   202 GQ-IAGQNVTLYCPKEKEYFKSNCTMDCREDYLKEQLAESAVINTSSAVT---MPQ--FWLFF-- 258
            .. :..:.:.::   .|...|:|.       ::..::|.|..::.|..:|   .|:  :.:||  
Yeast   511 PDLLILKTLNIF---NKSILKTNF-------FITRKVAISFRLDPSLVMTKFEYPETPYGIFFVV 565

  Fly   259 -----GLLI-FSWI---GMAVVVS----IGDAICFGILGDRHHLYGKQRL-------CGSLGWGV 303
                 |..| |..|   |:.:|.|    |.|.....::.:.:.|...|:.       .||.  ||
Yeast   566 GNTFKGFHIRFRDIARGGIRIVCSRNQDIYDLNSKNVIDENYQLASTQQRKNKDIPEGGSK--GV 628

  Fly   304 FALLAGL----------------LVDHMSLGEVNKNYTAVFWMALLIM--------GFDVFAS-- 342
            ..|..||                ::|.:....:.:||..:.....::.        ||..:|:  
Yeast   629 ILLNPGLVEHDQTFVAFSQYVDAMIDILINDPLKENYVNLLPKEEILFFGPDEGTAGFVDWATNH 693

  Fly   343 SKLRHTP------THLSSNI----LKDVGQMFLSVRCVIFFLWCVAIGLGTALIWNFLF------ 391
            :::|:.|      |..|.::    ..:.|...|.||..:..:: ..:.|..:.::.|..      
Yeast   694 ARVRNCPWWKSFLTGKSPSLGGIPHDEYGMTSLGVRAYVNKIY-ETLNLTNSTVYKFQTGGPDGD 757

  Fly   392 -------------IYLEELDKAFEGCDSSIKTLEGLVMGIQCFGGELPFFFLSGWILKKIGHVNA 443
                         .||..||.:...||.     :||.....|                ::.|...
Yeast   758 LGSNEILLSSPNECYLAILDGSGVLCDP-----KGLDKDELC----------------RLAHERK 801

  Fly   444 MSVVLFGFGVRFILYSMLQNPWYILPIELM-----------NGVTFGLFYAT----MASYASIVA 493
            |   :..|..     |.|.|..:.:.::.|           ||.||...:.|    ...:..|..
Yeast   802 M---ISDFDT-----SKLSNNGFFVSVDAMDIMLPNGTIVANGTTFRNTFHTQIFKFVDHVDIFV 858

  Fly   494 PPG---TDATMQSLVGAIFEGVG-VSMGSLIAG-QLFESVTARTTFEIFGIGAFIVFVIHVCIQL 553
            |.|   ...|:.:|...:.|..| ..:..::.| .||.:..|:...|           .|.|| |
Yeast   859 PCGGRPNSITLNNLHYFVDEKTGKCKIPYIVEGANLFITQPAKNALE-----------EHGCI-L 911

  Fly   554 YLQRNSNIDENGKGTVASASATASPSAPL 582
            :...::|     ||.|.|:|.....|..|
Yeast   912 FKDASAN-----KGGVTSSSMEVLASLAL 935

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SugbNP_648493.3 MFS 9..82 CDD:304372
MFS_1 16..>96 CDD:284993
MFS_1 <252..518 CDD:284993 65/363 (18%)
MFS <254..547 CDD:119392 69/389 (18%)
GDH2NP_010066.1 Bac_GDH 1..1092 CDD:421780 117/614 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.78878 Normalized mean entropy S3904
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.950

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