DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sugb and skpo-1

DIOPT Version :9

Sequence 1:NP_648493.3 Gene:Sugb / 39314 FlyBaseID:FBgn0036191 Length:604 Species:Drosophila melanogaster
Sequence 2:NP_495768.1 Gene:skpo-1 / 174340 WormBaseID:WBGene00009897 Length:655 Species:Caenorhabditis elegans


Alignment Length:109 Identity:24/109 - (22%)
Similarity:48/109 - (44%) Gaps:30/109 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   439 GHVNAMSVVLFGFGVRFILYSMLQNPWYILPIELMNGVTFGLFYATMASYASIVAPPGTDATMQS 503
            ||||:: ::|||   :|:.:.:..|.          ...|.....:....|||.||| :|.:.:.
 Worm   207 GHVNSL-LMLFG---QFVSHDITSNA----------AQNFCGCQNSGPMCASIFAPP-SDRSRRC 256

  Fly   504 L-------------VGAIFEGVGVSMGSLIAGQLF--ESVTART 532
            :             .|.:.|.:.::..::.|..::  |::|||:
 Worm   257 IPFTRSFPICGTGQFGRVREQLNMNTAAIDASLIYGSEAITARS 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SugbNP_648493.3 MFS 9..82 CDD:304372
MFS_1 16..>96 CDD:284993
MFS_1 <252..518 CDD:284993 19/91 (21%)
MFS <254..547 CDD:119392 24/109 (22%)
skpo-1NP_495768.1 ShKT 22..56 CDD:214586
An_peroxidase 143..623 CDD:281139 24/109 (22%)
peroxinectin_like 275..619 CDD:188655 6/26 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.78878 Normalized mean entropy S3904
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.950

Return to query results.
Submit another query.