DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG32085 and SKP2B

DIOPT Version :10

Sequence 1:NP_729732.1 Gene:CG32085 / 39311 FlyBaseID:FBgn0052085 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_565147.1 Gene:SKP2B / 844036 AraportID:AT1G77000 Length:360 Species:Arabidopsis thaliana


Alignment Length:396 Identity:90/396 - (22%)
Similarity:151/396 - (38%) Gaps:124/396 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   280 IEQLM-----LDDRFLSRFFQYFSPYERRILAQ-VCIKWRDT----LYRSPRYWSGLLPTLQCRE 334
            :|.||     :|||.:             |:|. :|..|||.    |.|....|        |: 
plant    33 VELLMKILNLVDDRTV-------------IIASCICSGWRDAVSLGLTRLSLSW--------CK- 75

  Fly   335 LRQMPGCDRGKLYNSLIRRGFHALGLVGASDEDALDVVHSFPLASKHV--HSLSLRCS--SISDR 395
                      |..|||:                       ..||.|.|  .:|.||..  .:.|.
plant    76 ----------KNMNSLV-----------------------LSLAPKFVKLQTLVLRQDKPQLEDN 107

  Fly   396 GLETLLDHLQSLFELELAGCNEVTEAGLWA----CLTPRIVSLSLADCINIADEAVGAVAQLLPS 456
            .:|.:.:|...|.:|:|:..:::|:..|::    |  ..:..|:|:.|.:.:|.|:..:.:....
plant   108 AVEAIANHCHELQDLDLSKSSKITDHSLYSLARGC--TNLTKLNLSGCTSFSDTALAHLTRFCRK 170

  Fly   457 LYEFSL----QAYHVTD---AALGYFSPKQSHSLSILRLQSCWELTNHGIVNIVHSLPHLTVLSL 514
            |...:|    :|  |:|   .|:|    :..:.|..|.|..|..:::.|::::.:..|.|..|.|
plant   171 LKILNLCGCVEA--VSDNTLQAIG----ENCNQLQSLNLGWCENISDDGVMSLAYGCPDLRTLDL 229

  Fly   515 SGCSKLTDDGVELIAENLQKLRALDLSWCPRITDASLEYIA------------------CDLNQL 561
            ..|..:||:.|..:|.....||:|.|.:|..|||.::..:|                  .|...|
plant   230 CSCVLITDESVVALANRCIHLRSLGLYYCRNITDRAMYSLAQSGVKNKHEMWRAVKKGKFDEEGL 294

  Fly   562 EELTLDRCVHITDIGVGYISTMLSLTALFLRWCSQVRDFGLQHLCSMRNLQVLSLAGCPLLTSSG 626
            ..|.:.:|.::|...|..:             |.   .|...|.||.|:..|:|  ||..|.|..
plant   295 RSLNISQCTYLTPSAVQAV-------------CD---TFPALHTCSGRHSLVMS--GCLNLQSVH 341

  Fly   627 LSSLIQ 632
            .:.::|
plant   342 CACILQ 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG32085NP_729732.1 F-box_FBXL16 283..325 CDD:438899 14/51 (27%)
leucine-rich repeat 382..406 CDD:275381 7/27 (26%)
AMN1 383..600 CDD:187754 54/247 (22%)
leucine-rich repeat 431..456 CDD:275381 5/24 (21%)
leucine-rich repeat 457..482 CDD:275381 7/31 (23%)
leucine-rich repeat 483..508 CDD:275381 5/24 (21%)
leucine-rich repeat 509..534 CDD:275381 8/24 (33%)
leucine-rich repeat 535..560 CDD:275381 10/42 (24%)
leucine-rich repeat 561..585 CDD:275381 5/23 (22%)
leucine-rich repeat 586..610 CDD:275381 5/23 (22%)
leucine-rich repeat 636..661 CDD:275381
SKP2BNP_565147.1 F-box_AtSKP2-like 27..74 CDD:438932 15/61 (25%)
leucine-rich repeat 66..91 CDD:275381 11/66 (17%)
leucine-rich repeat 92..118 CDD:275381 6/25 (24%)
AMN1 <115..264 CDD:187754 40/156 (26%)
leucine-rich repeat 119..144 CDD:275381 6/26 (23%)
leucine-rich repeat 145..170 CDD:275381 5/24 (21%)
leucine-rich repeat 171..197 CDD:275381 7/31 (23%)
leucine-rich repeat 198..223 CDD:275381 5/24 (21%)
leucine-rich repeat 224..249 CDD:275381 8/24 (33%)
leucine-rich repeat 250..272 CDD:275381 9/21 (43%)
leucine-rich repeat 294..319 CDD:275381 7/40 (18%)
Blue background indicates that the domain is not in the aligned region.

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