DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG32085 and SKIP2

DIOPT Version :9

Sequence 1:NP_729732.1 Gene:CG32085 / 39311 FlyBaseID:FBgn0052085 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_569047.1 Gene:SKIP2 / 836860 AraportID:AT5G67250 Length:527 Species:Arabidopsis thaliana


Alignment Length:458 Identity:108/458 - (23%)
Similarity:172/458 - (37%) Gaps:133/458 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   285 LDDRFLSRFFQYFSPYERRILAQVCIKWRDTLYRSPRYWSGLLPTLQCRELRQMPGCDRGKLYNS 349
            |.|..|:..||:....:|:..:.||.:|             ||...|.|                
plant    46 LPDECLAHVFQFLGAGDRKRCSLVCKRW-------------LLVDGQSR---------------- 81

  Fly   350 LIRRGFHALGLVGASDEDALDVVHSFPLAS-----KHVHSLSLRCS----SISDRGLETLLDHLQ 405
                  |.|.|      ||.|.:.|| |.|     ..|..|:|||.    |:||..|..:.....
plant    82 ------HRLSL------DAKDEISSF-LTSMFNRFDSVTKLALRCDRKSVSLSDEALAMISVRCL 133

  Fly   406 SLFELELAGCNEVTEAGL--WACLTPRIVSLSLADCINIADEAVGAVAQLLPSLYEFSL------ 462
            :|..::|.||.|:|:.|:  :|.....:..||:..| |...:.|.|:.:....|.|.|:      
plant   134 NLTRVKLRGCREITDLGMEDFAKNCKNLKKLSVGSC-NFGAKGVNAMLEHCKLLEELSVKRLRGI 197

  Fly   463 ----QAYHVTDAALG---------------YFSP-----KQSHSLSILRLQSCWELTNHGIVNIV 503
                :..|:.|.|..               .|.|     :...:|.|:|....|:.....|.|..
plant   198 HEAAELIHLPDDASSSSLRSICLKELVNGQVFEPLLATTRTLKTLKIIRCLGDWDKVLQMIANGK 262

  Fly   504 HSLP--HLTVL--------SLSGCSKL-----------TDDGVELIAENLQKLRALDL-SW-CPR 545
            .||.  ||..|        ::|.||.:           ::.|:..:||..:.||.|.: .| ..|
plant   263 SSLSEIHLERLQVSDIGLSAISKCSNVETLHIVKTPECSNFGLIYVAERCKLLRKLHIDGWRTNR 327

  Fly   546 ITDASLEYIACDLNQLEELTLDRCVHITDIGVGYISTMLSLTALFLRWCSQVRDFGL-------- 602
            |.|..|..:|.....|:||.|          :|..:|.:||.|:... |.::....|        
plant   328 IGDEGLLSVAKHCLNLQELVL----------IGVNATHMSLAAIASN-CEKLERLALCGSGTIGD 381

  Fly   603 -QHLCSMRN---LQVLSLAGCPLLTSSGLSSL-IQLRHLQELELTNCPGASHELFDYLKEHLPRC 662
             :..|..|.   |:...:.||| ::..|:.:| :...:|.:|::..|...:.|:.|:|:|. .|.
plant   382 TEIACIARKCGALRKFCIKGCP-VSDRGIEALAVGCPNLVKLKVKKCKVVTGEIGDWLREQ-RRT 444

  Fly   663 LII 665
            |::
plant   445 LVV 447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG32085NP_729732.1 leucine-rich repeat 382..406 CDD:275381 9/27 (33%)
AMN1 383..600 CDD:187754 66/275 (24%)
leucine-rich repeat 431..456 CDD:275381 6/24 (25%)
leucine-rich repeat 457..482 CDD:275381 8/54 (15%)
leucine-rich repeat 483..508 CDD:275381 8/26 (31%)
leucine-rich repeat 509..534 CDD:275381 8/43 (19%)
leucine-rich repeat 535..560 CDD:275381 9/26 (35%)
leucine-rich repeat 561..585 CDD:275381 6/23 (26%)
leucine-rich repeat 586..610 CDD:275381 5/32 (16%)
leucine-rich repeat 636..661 CDD:275381 7/24 (29%)
SKIP2NP_569047.1 F-box-like 45..>73 CDD:403981 8/26 (31%)
AMN1 82..295 CDD:187754 55/220 (25%)
leucine-rich repeat 106..128 CDD:275381 9/21 (43%)
leucine-rich repeat 135..160 CDD:275381 8/24 (33%)
leucine-rich repeat 161..185 CDD:275381 6/24 (25%)
leucine-rich repeat 239..264 CDD:275381 6/24 (25%)
leucine-rich repeat 265..288 CDD:275381 6/22 (27%)
leucine-rich repeat 289..314 CDD:275381 3/24 (13%)
AMN1 <311..>416 CDD:187754 28/116 (24%)
leucine-rich repeat 315..342 CDD:275381 9/26 (35%)
leucine-rich repeat 343..367 CDD:275381 10/34 (29%)
leucine-rich repeat 368..393 CDD:275381 3/24 (13%)
leucine-rich repeat 394..418 CDD:275381 6/24 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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