DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG32085 and SNC1

DIOPT Version :9

Sequence 1:	NP_729732.1	Gene:	CG32085 / 39311	FlyBaseID:	FBgn0052085	Length:	666	Species:	Drosophila melanogaster
Sequence 2:	NP_001319970.1	Gene:	SNC1 / 827397	AraportID:	AT4G16890	Length:	1437	Species:	Arabidopsis thaliana

Alignment Length:	425	Identity:	89/425 - (20%)
Similarity:	161/425 - (37%)	Gaps:	118/425 - (27%)

- Green bases have known domain annotations that are detailed below.

  Fly   317 YRSPRYWSGL--------LPTLQCRELRQMPGCDRGKLYNSLIRRGFHAL--------------- 358
            |:..:.|.|:        :...:...|.::|...:.....|||.....:|
plant   769 YKHEKLWEGIQSLGSLEGMDLSESENLTEIPDLSKATKLESLILNNCKSLVTLPSTIGNLHRLVR 833

  Fly   359 -------GL------VGASDEDALDV-----VHSFPLASKHVHSLSLRCSSISDRGLETLLDHLQ 405
                   ||      |..|..:.||:     :.||||.|.::..|.|..::|.:  :.:.:.:|.
plant   834 LEMKECTGLEVLPTDVNLSSLETLDLSGCSSLRSFPLISTNIVWLYLENTAIEE--IPSTIGNLH 896

  Fly   406 SLFELELAGCN--EV--TEAGLWACLTPRIVSLSLADCINIADEAVGAVAQLLPSLYEFSLQAYH 466
            .|..||:..|.  ||  |:..|     ..:.:|.|:.|.::  .:...:::.:..||..:.....
plant   897 RLVRLEMKKCTGLEVLPTDVNL-----SSLETLDLSGCSSL--RSFPLISESIKWLYLENTAIEE 954

  Fly   467 VTDAALGYFSPKQSHSLSILRLQSCWELTNHGIVNIVHSLPHLTVLSLSGCSKLTDDGVEL--IA 529
            :.|.:       ::.:|..|:|.:|..|..  :...:.:|..|....:..|:     |:|:  |.
plant   955 IPDLS-------KATNLKNLKLNNCKSLVT--LPTTIGNLQKLVSFEMKECT-----GLEVLPID 1005

  Fly   530 ENLQKLRALDLSWC------PRIT---------DASLEYIAC---DLNQLEELTLDRCVHI---- 572
            .||..|..||||.|      |.|:         :.::|.|..   :|::|.:|.:..|..:
plant  1006 VNLSSLMILDLSGCSSLRTFPLISTNIVWLYLENTAIEEIPSTIGNLHRLVKLEMKECTGLEVLP 1070

  Fly   573 TDIGVGYISTMLSLTALFLRWCSQVRDFGL----------------QHLCSMRN---LQVLSLAG 618
            ||:.:.      ||..|.|..||.:|.|.|                :..|.:.:   |.||.:..
plant  1071 TDVNLS------SLMILDLSGCSSLRTFPLISTRIECLYLQNTAIEEVPCCIEDFTRLTVLMMYC 1129

  Fly   619 CPLLTSSGLSSLIQLRHLQELELTNCPGASHELFD 653
            |..|.:.. .::.:|..|:..:.|:|.|....|.|
plant  1130 CQRLKTIS-PNIFRLTRLELADFTDCRGVIKALSD 1163

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG32085	NP_729732.1	leucine-rich repeat	382..406	CDD:275381	4/23 (17%)
		AMN1	383..600	CDD:187754	54/244 (22%)
		leucine-rich repeat	431..456	CDD:275381	3/24 (13%)
		leucine-rich repeat	457..482	CDD:275381	3/24 (13%)
		leucine-rich repeat	483..508	CDD:275381	6/24 (25%)
		leucine-rich repeat	509..534	CDD:275381	7/26 (27%)
		leucine-rich repeat	535..560	CDD:275381	11/42 (26%)
		leucine-rich repeat	561..585	CDD:275381	5/27 (19%)
		leucine-rich repeat	586..610	CDD:275381	9/39 (23%)
		leucine-rich repeat	636..661	CDD:275381	6/18 (33%)
SNC1	NP_001319970.1	LRR_3	13..1346	CDD:332712	89/425 (21%)
		leucine-rich repeat	579..594	CDD:275380
		leucine-rich repeat	601..623	CDD:275380
		LRR	<619..869	CDD:227223	16/99 (16%)
		leucine-rich repeat	624..646	CDD:275380
		leucine-rich repeat	647..670	CDD:275380
		leucine-rich repeat	671..693	CDD:275380
		leucine-rich repeat	705..763	CDD:275380
		leucine-rich repeat	784..806	CDD:275380	2/21 (10%)
		leucine-rich repeat	807..830	CDD:275380	4/22 (18%)
		leucine-rich repeat	831..853	CDD:275380	3/21 (14%)
		leucine-rich repeat	854..874	CDD:275380	7/19 (37%)
		leucine-rich repeat	875..897	CDD:275380	4/23 (17%)
		leucine-rich repeat	898..920	CDD:275380	8/26 (31%)
		leucine-rich repeat	921..941	CDD:275380	3/21 (14%)
		leucine-rich repeat	942..963	CDD:275380	3/27 (11%)
		leucine-rich repeat	964..987	CDD:275380	6/24 (25%)
		leucine-rich repeat	988..1021	CDD:275380	13/37 (35%)
		leucine-rich repeat	1022..1054	CDD:275380	5/31 (16%)
		leucine-rich repeat	1055..1077	CDD:275380	5/27 (19%)
		leucine-rich repeat	1099..1124	CDD:275380	2/24 (8%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1282076at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.010