DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG32085 and lrrc29

DIOPT Version :9

Sequence 1:NP_729732.1 Gene:CG32085 / 39311 FlyBaseID:FBgn0052085 Length:666 Species:Drosophila melanogaster
Sequence 2:XP_001339819.4 Gene:lrrc29 / 799466 ZFINID:ZDB-GENE-030131-7165 Length:644 Species:Danio rerio


Alignment Length:562 Identity:122/562 - (21%)
Similarity:190/562 - (33%) Gaps:226/562 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   280 IEQLMLDDRFLSRFFQYFSPYERRILAQVCIKW----------RDTLYRSPRYWS--GLLPTLQC 332
            :|.|.|....::..|.:....:|:..:.||..|          |:..::.|...|  |.:     
Zfish     1 MESLHLPSEIITYIFSFLHVMDRKEASLVCKSWYNASQDYPFKRNLTFKFPASSSSLGFI----- 60

  Fly   333 RELRQMPGCDRGKLYNSLIRRGFHALGLV-------GASDEDALDV-VHSFPLASKHVHSLSLRC 389
            |.|.:.|.|                 |||       ..|.:..|:| :|..|    .:.||:|..
Zfish    61 RGLARHPRC-----------------GLVISHLDGSSVSRQVLLEVGLHLGP----RLDSLALPG 104

  Fly   390 SSISDRGLETLLDHLQSLFELELAGCNEVTEAGLW------------ACLTPRIVSLSLADCINI 442
            |||::..|..||..|.||.:|:|.|.:.:..:|.:            |.|  .:..|:|::...:
Zfish   105 SSITESCLLELLPRLTSLRKLDLQGLDSLFMSGAFLSREEHRRKVYRALL--NLEELNLSNLRYL 167

  Fly   443 ADEAVGAVAQLLPSLYEFSLQAYHVT--------------------------------------D 469
            :|.:...:....|.|...||...|::                                      |
Zfish   168 SDLSFNRLTICTPGLRRLSLSGCHISFEFDPYRGCPVGSGSSALVSLRNLLNLLQKQTSTLRSLD 232

  Fly   470 AALGYFSPKQSHSLSILR--------LQSCWELTNHGIVNIVHSLPHLTVLSLSGCS-------- 518
            .:....:||...|:|.||        |..|.|||::.|..:......|.:|.||||.        
Zfish   233 LSRTGITPKSLRSISKLRGLRLEELNLHGCKELTDYSIEILCKYQSGLRMLDLSGCMELSCRAVL 297

  Fly   519 ------------------KLTDDGV-ELIAENLQKLRALDLSWCPRITDASL------------- 551
                              |:||.|: ||:.  |..||:||||.|..::...|             
Zfish   298 AVGAELKELRVLSFSQDWKITDKGLAELMM--LPHLRSLDLSECLHVSGTELVKGLSGPEPRAQV 360

  Fly   552 ------------EYIACDLNQ-----LEELTLDRCVHITDIGVGYISTML-SLTALFLRWCSQVR 598
                        :.:...|.|     |.||.|..||::||:.|..|:|.| :|..|.|.||.::.
Zfish   361 ETLSLRNCTYIRDSVVFSLAQLLGVHLRELDLSSCVYLTDLSVRAIATFLPALLVLRLGWCKEIS 425

  Fly   599 DFGL-------QH---------------------------------------------------- 604
            |:||       :|                                                    
Zfish   426 DWGLLGMTEPTKHCQPSDREEDKGPSFTRTFGNMGFFQPPSLPFQDKPRLVTDEDLEEFRDQQGA 490

  Fly   605 -LCSMRNLQVLSLAGCPLLTSSGLSSLIQLRHLQELELTNCP 645
             |.::|.||||.|..|..||.:.::.:::...||.|.|:..|
Zfish   491 SLLALRELQVLELTACSKLTDTSITQVLRFPELQRLSLSMLP 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG32085NP_729732.1 leucine-rich repeat 382..406 CDD:275381 10/23 (43%)
AMN1 383..600 CDD:187754 79/332 (24%)
leucine-rich repeat 431..456 CDD:275381 3/24 (13%)
leucine-rich repeat 457..482 CDD:275381 7/62 (11%)
leucine-rich repeat 483..508 CDD:275381 9/32 (28%)
leucine-rich repeat 509..534 CDD:275381 13/51 (25%)
leucine-rich repeat 535..560 CDD:275381 9/49 (18%)
leucine-rich repeat 561..585 CDD:275381 12/24 (50%)
leucine-rich repeat 586..610 CDD:275381 10/83 (12%)
leucine-rich repeat 636..661 CDD:275381 5/10 (50%)
lrrc29XP_001339819.4 F-box-like 4..49 CDD:289689 8/44 (18%)
leucine-rich repeat 71..96 CDD:275381 7/28 (25%)
leucine-rich repeat 97..121 CDD:275381 10/23 (43%)
leucine-rich repeat 122..179 CDD:275381 10/58 (17%)
leucine-rich repeat 182..227 CDD:275381 4/44 (9%)
AMN1 215..427 CDD:187754 53/213 (25%)
leucine-rich repeat 228..253 CDD:275381 7/24 (29%)
leucine-rich repeat 254..277 CDD:275381 6/22 (27%)
leucine-rich repeat 280..305 CDD:275381 6/24 (25%)
leucine-rich repeat 306..325 CDD:275381 4/18 (22%)
leucine-rich repeat 331..359 CDD:275381 8/27 (30%)
leucine-rich repeat 360..386 CDD:275381 2/25 (8%)
leucine-rich repeat 387..412 CDD:275381 12/24 (50%)
leucine-rich repeat 413..497 CDD:275381 10/83 (12%)
AMN1 <498..613 CDD:187754 13/35 (37%)
leucine-rich repeat 498..522 CDD:275381 8/23 (35%)
leucine-rich repeat 523..548 CDD:275381 5/10 (50%)
leucine-rich repeat 549..574 CDD:275381
leucine-rich repeat 575..598 CDD:275381
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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