DRSC/TRiP Functional Genomics Resources

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Protein Alignment Polr3H and polr2g

DIOPT Version :10

Sequence 1:NP_648490.1 Gene:Polr3H / 39310 FlyBaseID:FBgn0036188 Length:240 Species:Drosophila melanogaster
Sequence 2:NP_001017065.1 Gene:polr2g / 549819 XenbaseID:XB-GENE-1006751 Length:172 Species:Xenopus tropicalis


Alignment Length:121 Identity:27/121 - (22%)
Similarity:53/121 - (43%) Gaps:3/121 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFVLAELKDNVRIAPDQFHLKLVDAVRDEIDRKLANKVLLNVGLCIALKDIVSLKDSIILPGDGA 65
            ||....|:..:.:.|..|...|::.|:.::..::........|..||:..|.::...:|.||.|.
 Frog     1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGF 65

  Fly    66 SHTEVLFRYVVFRPMVGTVITGKIRNCSREGVHVTLGFFDDILIPHAALQHPSRFD 121
            ....|.::.:||||..|.|:...:...::.|:...:|.....:..|:.   ||..:
 Frog    66 VLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSI---PSEME 118

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Polr3HNP_648490.1 RNAP_III_Rpc25_N 2..81 CDD:239822 19/78 (24%)
RNA_pol_Rbc25 84..212 CDD:400543 6/38 (16%)
polr2gNP_001017065.1 PTZ00162 1..169 CDD:240298 27/121 (22%)

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