DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RIOK1 and riok-3

DIOPT Version :9

Sequence 1:NP_648489.1 Gene:RIOK1 / 39309 FlyBaseID:FBgn0036187 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_499173.1 Gene:riok-3 / 176387 WormBaseID:WBGene00014012 Length:510 Species:Caenorhabditis elegans


Alignment Length:492 Identity:145/492 - (29%)
Similarity:245/492 - (49%) Gaps:75/492 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 SDAEEDEEDLRSSEWTNDFKNLTLKHEIFKDIKLTPKEDCDDLAQVIATANE-EDEPEDEEPEEY 72
            :...:|:..:.:...|::...|.|:....::.         |:|:.:.:::. ...|:...|:..
 Worm    62 TSVSDDQLPINTEGMTDEEVALALQRHFDREA---------DVARAVGSSSSVHFTPDRYHPKTM 117

  Fly    73 DEDDYDDIGDDYDTYEEAYTG--FNKLHVQPQLTNASGGGSGGGAG------GASGGSQRVSSYQ 129
            .|.|.::  :|.|...:|.|.  :.||. :...||:.....|....      |.||......::.
 Worm   118 QETDSEN--EDDDALRQAATDMLYAKLD-EENATNSRLRPEGPSTSRTKHDTGVSGRRNADKTFN 179

  Fly   130 PNEKLLRRYSARINVEKYDPTTNM-----SAQAANRLVNFDRRD-RTQVR--DKHDRATAEQVMD 186
            ....|              ||.:|     :.:..|:|:.|.:.: :.|:|  ||.::||.:..:|
 Worm   180 DRNTL--------------PTGDMVGDKLNNKVFNKLMAFGKSESKRQMRNKDKEEKATMDTSVD 230

  Fly   187 PRTRMILFKLLNRGMIQEINGCISTGKEANVYHAVSKNGEEEFAIKIYKTSILVFKDRDKYVSGE 251
            ..||::|.|.:|:|:...::|.|:||||:.|.|| :::....:|||:|||::..||:|.:||..:
 Worm   231 SDTRLLLLKWINQGVFDSVDGIIATGKESAVLHA-AQDSATSYAIKVYKTTLSEFKNRSEYVKDD 294

  Fly   252 FRFRHGYCKHNPRKMVRTWAEKEMRNYLRMRNAGVPVPEPILLRSHVLVMRFCGRDGWPAPKLKD 316
            |||:      |||.:::.|||:|..|..||...|:|.|:|:.:|.:||||.|.|..|..||:||:
 Worm   295 FRFK------NPRGVLKIWAEREFMNLSRMAKHGLPCPQPVKVRRNVLVMSFLGDQGLAAPRLKN 353

  Fly   317 VE---LSTSKARELYRDCVVIMWRIYNQCRLVHADLSEFNILL-QDGQLVIIDVSQSVEHDHPHS 377
            ||   .:..:.|.:|.....||.|:|.:|.||||||||||:|| .|.::.:|||||:::..||.|
 Worm   354 VEWEFFTDDERRNVYDQVQSIMCRMYKECLLVHADLSEFNLLLTPDNKVHVIDVSQAMDLSHPRS 418

  Fly   378 FDFLRKDCTNISEFFRKRAVATM-TVKELFDFITDQTITTENMEECLERISERIKDRDFDAISAQ 441
            ..||.:|..||..||.:.....: |..:||:.|||           |:.:      .|.|.:...
 Worm   419 LQFLTRDIQNIITFFTRIGTPNLPTYVQLFNLITD-----------LDMV------EDHDLLVQV 466

  Fly   442 EKIDEAVWQNTYIPKRLDEVRHFERDVAKAKQGVQQN 478
            |:..|   :|..:..|.|:.|..:.::.|..:..:.|
 Worm   467 EQFSE---ENRSVDLRHDKSRPADMELKKYNEEKKAN 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RIOK1NP_648489.1 RIO1 164..420 CDD:224632 106/263 (40%)
RIO1_euk 205..395 CDD:270698 86/193 (45%)
riok-3NP_499173.1 RIO1 210..437 CDD:224632 99/233 (42%)
RIO 218..453 CDD:214511 101/241 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1718
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1238900at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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