DRSC/TRiP Functional Genomics Resources

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Protein Alignment Duba and otud4

DIOPT Version :10

Sequence 1:NP_648482.3 Gene:Duba / 39302 FlyBaseID:FBgn0036180 Length:659 Species:Drosophila melanogaster
Sequence 2:NP_001072598.1 Gene:otud4 / 780053 XenbaseID:XB-GENE-5900161 Length:1051 Species:Xenopus tropicalis


Alignment Length:527 Identity:99/527 - (18%)
Similarity:169/527 - (32%) Gaps:185/527 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   211 MEQRGYELKPVEEDGACLFRSISLQIYGDEEMHDVIRQHTMDYIHENREYFGQFVTEDINSYIQR 275
            :...|...|.:.:||:||||:::.|:...:..|..||:..::|:.:||..:...:......|::.
 Frog    23 LRSEGLYRKKIAKDGSCLFRAVAEQVMHSQSEHLKIRKSCINYLRKNRGQYEALIEGSFEDYLKS 87

  Fly   276 KRARDAHGNHIEIQAISEIYSRTVEVY--------CYQSNPINIFNSEQSQAGYPPLRLSYQRGS 332
            ..........:||.|:|.::.:...:|        |...|..    ||:       :.|.:..|:
 Frog    88 LENPQEWVGQVEISALSLMFKKDFIIYQEPNVPPACVTENGF----SEK-------IMLCFSNGN 141

  Fly   333 HYNAILDP------------------YNATVGVGLG----------------------------- 350
            ||: |:.|                  |...:||.:|                             
 Frog   142 HYD-IIYPIGFAESAAMCQSIIYELLYEKVMGVNVGKYMVEQDTCGPNATGEVYCSDGSGSEGED 205

  Fly   351 -----------LAGYKPEIQTKEAVRLSEQLEIEQTMFEDKLK---TTDWEATNEAIEEQIARES 401
                       :.|:||....|...:..|    |.||....|:   ||           |.....
 Frog   206 VSKNIKTNFADMNGFKPHKDDKCPQKKKE----EPTMLPSVLRSLHTT-----------QYRNVE 255

  Fly   402 YLQWCRENTQRSRNSNTAAGSATSSTVTSAEALTDSDASPSKYSA---C------GG-------- 449
            |..|.:  |||.:                 :.|..|.|:..:||.   |      ||        
 Frog   256 YEVWLK--TQRDQ-----------------QKLDFSIAAGMQYSVGDKCQVRVEPGGKFYNAHIQ 301

  Fly   450 -TGSSGNPPVALTSGSGGDGAGPAFSLSPKTLNQFSHKLPQEVNELGGYDSDATDMSSTSSVGHS 513
             .|:...|.:......|...|.....|.|         :||.:....|:::.|         |..
 Frog   302 EVGTETGPVIVFVEELGEKHAVQLKHLKP---------IPQTIISTEGWNTVA---------GKK 348

  Fly   514 GGSSSPS--TAASQRSGKGSK------SQRRATALRKKRRHETRETTLASKSAEALEAPLRKSPK 570
            ...:.||  .|.:::..:|.|      .|:.|..||:::....::..|:|:.:            
 Frog   349 QKKALPSGTNAQTEKDYRGQKGFGKPVKQQAAQPLRQQQAAGNKQYGLSSQLS------------ 401

  Fly   571 RDSAPSVARADTPEAEQRPSTSKQSSHSPQKNVDSKSPTEQSYSSFYQELLEASYANEGANESEM 635
             |.||.             |.:|..|.:|.|....|...|:|.:..:...:|.....|...||:.
 Frog   402 -DQAPQ-------------SENKGRSKTPPKVPGRKVERERSENVTFGLTVEERKEKEAIEESKS 452

  Fly   636 LQQAIQM 642
            |.:...|
 Frog   453 LYEMQSM 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DubaNP_648482.3 OTU_OTUD5-like 215..339 CDD:438589 30/131 (23%)
PTZ00449 <432..>634 CDD:185628 44/227 (19%)
otud4NP_001072598.1 OTU_OTUD4 19..148 CDD:438615 30/136 (22%)
Tudor_OTUD4 270..333 CDD:410519 13/71 (18%)
PHA03247 <465..864 CDD:223021
Blue background indicates that the domain is not in the aligned region.

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