DRSC/TRiP Functional Genomics Resources

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Protein Alignment Duba and otud3

DIOPT Version :10

Sequence 1:NP_648482.3 Gene:Duba / 39302 FlyBaseID:FBgn0036180 Length:659 Species:Drosophila melanogaster
Sequence 2:NP_001005056.1 Gene:otud3 / 448607 XenbaseID:XB-GENE-5795843 Length:407 Species:Xenopus tropicalis


Alignment Length:434 Identity:92/434 - (21%)
Similarity:161/434 - (37%) Gaps:135/434 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   205 LEFAKCMEQRGYELKPVEEDGACLFRSISLQIYGDEEMHDVIRQHTMDYIHENREYFGQFVTEDI 269
            :.||..::..|..::.|..||.||||::..||.|....|...|..|::|:.::|:.|..||.:|:
 Frog    48 VSFANQLQVLGLRVREVPGDGNCLFRALGDQIEGHSRNHLRHRHETVEYMIKHRDDFEPFVEDDV 112

  Fly   270 --NSYIQRKRARDAHGNHIEIQAISEIYSRTVEVYCYQ-SNPI-NIFNSEQSQAGYPPLRLSYQR 330
              :.::...........:..|.|.:.  :..|.|..:| :||: :|..|:::.:  ..|.::|:.
 Frog   113 PFDRHVANLAKSGTFAGNDAIVAFAR--NNQVNVVIHQLNNPLWHIRGSDKADS--RELHIAYRY 173

  Fly   331 GSHYNA---ILDPYNATVGVGLGLAGYKPEIQTKE-AVRLSEQLEIEQTMFEDKLKTTDWEATNE 391
            |.||::   |.|  ||.:...|     :.|:.:|: |.:.|.|.  :.::.:|:.:..|      
 Frog   174 GEHYDSVRRIND--NAEMPANL-----QTEMLSKDKANQRSRQK--KPSVSDDRSELHD------ 223

  Fly   392 AIEEQIARESYLQWCRENTQRSRNSNTAAG--------SATSSTVTSA-------EAL------- 434
                            :..|:.||:...|.        .|.|..:.||       |.|       
 Frog   224 ----------------DAVQKVRNATGCADIPLILQSLEAESYDIDSAIHSILQIEELRLIDNDN 272

  Fly   435 ---TDSDASPSKYSA------------CGGTGSSGNPPVALT---SGSGGDGAGPAFSLSPKTLN 481
               ..:|||...||:            |.|.....|..:.:|   :|:...|.....|:..::..
 Frog   273 YQDCAADASNCPYSSGSLHSNEYGESDCLGQEQKENSNLDVTERWTGNADPGLAEGASVDARSTT 337

  Fly   482 QFSHKLPQEVNELGGYDSDATDMSSTSSVGHSGGSSSPSTAASQRSGKGSKSQRRATALRKKRRH 546
            | .||..:|..:|                                |.|..|.|:|.   :||:|.
 Frog   338 Q-EHKASKEQQKL--------------------------------SNKQRKDQQRQ---QKKKRQ 366

  Fly   547 ETRETTLASKSAEALEAPLRKSPKRDSAPSVARADTPEAEQRPS 590
            |.|                .:...::|...||:.:..|||...|
 Frog   367 EER----------------HRQKVQESRGKVAQNNRQEAEAENS 394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DubaNP_648482.3 OTU_OTUD5-like 215..339 CDD:438589 35/130 (27%)
PTZ00449 <432..>634 CDD:185628 36/184 (20%)
otud3NP_001005056.1 OTU_OTUD3 46..190 CDD:438607 40/147 (27%)

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