DRSC/TRiP Functional Genomics Resources

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Protein Alignment Duba and otud6b

DIOPT Version :10

Sequence 1:NP_648482.3 Gene:Duba / 39302 FlyBaseID:FBgn0036180 Length:659 Species:Drosophila melanogaster
Sequence 2:NP_956519.1 Gene:otud6b / 393194 ZFINID:ZDB-GENE-040426-974 Length:293 Species:Danio rerio


Alignment Length:322 Identity:67/322 - (20%)
Similarity:114/322 - (35%) Gaps:97/322 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 DELARTHRCSPHKSTRSKRREHHEAHAHLYKRDRLEREKLVHPTAAA----------------GS 112
            ::||:.|| ...|..::|.:....|   :.|.|:..|::|....|..                .|
Zfish     9 EQLAKQHR-KEKKDLQAKIQSMKNA---VPKNDKKRRKQLTEDIAKLEAELSQKHENELKLQNTS 69

  Fly   113 GAPGVSGSKCNSPPSTSTSGSSSPSAVGRNSPEHLGLGCTTVPTAQVQMSTSTAAA-------NL 170
            ....||.: .:|....:....|.||...|              |::.|......||       .:
Zfish    70 SVEEVSDA-LDSMSVANHEEQSDPSKQSR--------------TSKAQKRRDKKAALEKEREMRI 119

  Fly   171 LKTVEETFSGYNSGDEHHQP----KERLIPVEEWQRRDLEFAKCMEQRGYELKPVEEDGACLFRS 231
            .:...|..||     ..||.    :|:|:                 :|..::|.:..||.|::|:
Zfish   120 AEAEVENLSG-----SRHQEGLKLREKLV-----------------ERHLQIKEISSDGHCMYRA 162

  Fly   232 ISLQI------YGDEEMHDVIRQHTMDYIHENREYFGQFVT----------EDINSYIQRKRARD 280
            :..|:      .|.:|:.|    .|..|:..:.:.|..|:|          |:...|........
Zfish   163 VEHQLTERGLALGLKELRD----QTAQYMRSHADDFMPFLTNPNTGDMYTAEEFEKYCSDVADTA 223

  Fly   281 AHGNHIEIQAISEIYSRTVEVYCYQSNPINIFNSEQSQAGYPPLRLSYQR-----GSHYNAI 337
            |.|..:|::|:|::....:||....|..|.| ..|..:   |.:.|.|.|     |.|||::
Zfish   224 AWGGQLELKALSQVLQLPIEVIQADSPCITI-GEEYDK---PKITLIYMRHAYGLGEHYNSV 281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DubaNP_648482.3 OTU_OTUD5-like 215..339 CDD:438589 35/144 (24%)
PTZ00449 <432..>634 CDD:185628
otud6bNP_956519.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..43 10/37 (27%)
COG4913 <2..>151 CDD:443941 32/182 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 57..114 12/71 (17%)
OTU_OTUD6 138..282 CDD:438598 38/169 (22%)
Cys-loop. /evidence=ECO:0000250 152..158 2/5 (40%)
Variable-loop. /evidence=ECO:0000250 219..229 2/9 (22%)
His-loop. /evidence=ECO:0000250 267..277 3/9 (33%)
Blue background indicates that the domain is not in the aligned region.

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