DRSC/TRiP Functional Genomics Resources

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Protein Alignment Duba and otud4

DIOPT Version :10

Sequence 1:NP_648482.3 Gene:Duba / 39302 FlyBaseID:FBgn0036180 Length:659 Species:Drosophila melanogaster
Sequence 2:NP_001428206.1 Gene:otud4 / 327127 ZFINID:ZDB-GENE-030131-5338 Length:1360 Species:Danio rerio


Alignment Length:493 Identity:99/493 - (20%)
Similarity:187/493 - (37%) Gaps:115/493 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   183 SGDEHHQPKERLIPVEEWQRRDLEFAKCMEQRGYELKPVEEDGACLFRSISLQIYGDEEMHDVIR 247
            :||..|:.:     ::|:.|          ..|:..|.:.:||:||||:::.||...:.:|..:|
Zfish    15 AGDRTHESR-----MDEYLR----------SLGFYRKKIAKDGSCLFRAVAEQILHCQGLHTQVR 64

  Fly   248 QHTMDYIHENREYFGQFVTEDINSYIQRKRARDAHGNHIEIQAISEIYSRTVEVYCYQSN-PINI 311
            ...::|:.:||..:..|:..:...|::..:...:....:||.|::|:|.....::..... |:|:
Zfish    65 AACVNYLRQNRPTYELFIEGNFEKYLENLQDPQSWVGQVEISALAELYKHDFIIFQEPDQPPVNL 129

  Fly   312 FNSEQSQAGYP-PLRLSYQRGSHYNAILDP-----------------YNATVGVGLGL------A 352
                 ::.|:. .:||.:..|:||:::...                 |....||...:      .
Zfish   130 -----TENGFTHKVRLCFLNGNHYDSVYPESFEKNAAVCQSILYELLYERVCGVERNVVGSCVKG 189

  Fly   353 GYKPEIQTKEAVRLSEQLEIEQTMF---EDKLKTTDW--------------------EATNEAIE 394
            |...:.|..|..:.||:.|:|:..|   |.:.||::.                    |..:..::
Zfish   190 GRGRDRQDSEECKSSEESELEEDDFWSTEPREKTSNGMNARPPQRGRGRGYSRGRGREFLSTKVQ 254

  Fly   395 EQI-----ARESYLQWCR-ENTQRSRNSNTAAGSATSSTVTSAEALTDSDASPSKYSACGGTGSS 453
            :.:     ....|..|.| :..|:.|:...|||...|   ...:.......|...|||.....|.
Zfish   255 KSLNPTLYRNVEYDVWLRSKRLQQQRDFCIAAGMQYS---VGDKCKVQLSGSNRLYSAYVKEVSP 316

  Fly   454 GNPPVALTSGSGGDGAGPAFSLSPKTLNQFSHKLPQE-------VNELGGYDSDATDMSSTSSVG 511
            .|.||.:......         ..:|:...:.:||.|       |:|.|...:...:.:...|..
Zfish   317 DNGPVTVFIEELN---------KQQTVPLLNLRLPSEEPQSWHTVSERGKRQAAPNNGAQIPSEW 372

  Fly   512 HSGGSSSPSTAASQRSGKGSKSQRRATALRKKRRHE--TRETTLASKSAEALEAPLRKSPKRDSA 574
            .|.|...|:...||          .|.::|..::|.  .:.||..:|:..:     |:|.:|.|.
Zfish   373 ESRGGRRPNRMQSQ----------SAPSVRVHKQHSWPPQATTDDAKNKFS-----RRSDQRSSP 422

  Fly   575 PSVARADTPEAEQRPSTSKQSSHSPQKNVDSKSPTEQS 612
            ..:    .|| |:..|...:..|..:.|..|..|:.|:
Zfish   423 VCI----LPE-EEEESVVLELLHKDEHNFPSLGPSPQT 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DubaNP_648482.3 OTU_OTUD5-like 215..339 CDD:438589 30/125 (24%)
PTZ00449 <432..>634 CDD:185628 40/190 (21%)
otud4NP_001428206.1 None

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