DRSC/TRiP Functional Genomics Resources

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Protein Alignment Duba and Otud4

DIOPT Version :10

Sequence 1:NP_648482.3 Gene:Duba / 39302 FlyBaseID:FBgn0036180 Length:659 Species:Drosophila melanogaster
Sequence 2:NP_001178629.1 Gene:Otud4 / 307774 RGDID:1305606 Length:1105 Species:Rattus norvegicus


Alignment Length:531 Identity:106/531 - (19%)
Similarity:179/531 - (33%) Gaps:171/531 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   190 PKERLIPVEEWQRRDLEFAKCMEQRGYELKPVEEDGACLFRSISLQIYGDEEMHDVIRQHTMDYI 254
            |.|...|::.:.|:          .|...|.|.:||:||||:::.|:...:..|..:|...:.|:
  Rat    18 PLEDATPMDAYLRK----------LGLYRKLVAKDGSCLFRAVAEQVLHSQSRHVEVRMACIRYL 72

  Fly   255 HENREYFGQFVTEDINSYIQRKRARDAHGNHIEIQAISEIYSRTVEVYCYQSNPINIFNSEQSQA 319
            .:|||.|..|:......|::|..........:||.|:|.:|.:...:|   ..| |:..|..::.
  Rat    73 RDNREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFVIY---QEP-NVSPSHVTEN 133

  Fly   320 GYP-PLRLSYQRGSHYNAILDPYNATVGVGLGLAGYKPEIQTKEAVRLSEQLEIEQTMFEDKLKT 383
            .:| .:.|.:..|:||:.:.                  .|..:::..:.:.|..|  :..:|:..
  Rat   134 NFPEKVLLCFSNGNHYDIVY------------------PITYRDSSAVCQSLLYE--LLYEKVFK 178

  Fly   384 TDWEATNEAIE-EQIARESYLQWCRENTQRSRNSNTAAGSATSSTVTSAEALTDSDASPSKYSAC 447
            ||.......:| .::|.||                       :|.::.:|    .|:..||.:|.
  Rat   179 TDVSKIMMGLETSEVADES-----------------------NSEISDSE----DDSCKSKSTAA 216

  Fly   448 ---GGTGSSG--NPPVALTSGSGGDGAGPAFSLSPKTLNQFSHKLPQEVNELGGYD--------S 499
               .|..|||  ||.   ..|:..|     ..||.|.|...|..:.:.|.    |:        .
  Rat   217 TDVNGFKSSGSENPK---NHGNSAD-----LPLSRKVLKSLSPAVYRNVE----YEIWLKSKQAQ 269

  Fly   500 DATDMSSTSSVGHSGGS---------------------SSPSTAASQRSGK-------------- 529
            ...|.|..:.:.:.||.                     |......|:..||              
  Rat   270 QKRDYSIAAGLQYEGGERCHVRLDHNGKLSNADIHGVHSENGPVLSEELGKKQTPKNLKPPPPES 334

  Fly   530 -----GSKSQRRATALRKKRRHETRETTLASKSAEALEAPLRKSPKRDSAPSVARADTPEAEQRP 589
                 |.|       ::|....:...:....:..:.|..|::       |||   |..|..:..|
  Rat   335 WNTVSGKK-------MKKPNSGQNFHSDTDYRGPKNLNKPIK-------APS---ALPPRLQHPP 382

  Fly   590 STSKQ---SSHSPQKNVDSKSPTEQSYSSFYQELLEASYANEGANESEMLQQAIQMSTRDYMED- 650
            :..:|   |||       |..|..|..||            |..|.|.:..|..:...|:..|| 
  Rat   383 AGVRQHALSSH-------STGPQSQKSSS------------EHKNLSRVPSQITRKPDRERAEDF 428

  Fly   651 ---QKRKFLFG 658
               .:..:.||
  Rat   429 DHVSRESYYFG 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DubaNP_648482.3 OTU_OTUD5-like 215..339 CDD:438589 34/124 (27%)
PTZ00449 <432..>634 CDD:185628 50/257 (19%)
Otud4NP_001178629.1 OTU_OTUD4 25..154 CDD:438615 35/160 (22%)
Tudor_SF 273..332 CDD:470623 8/58 (14%)
PHA03247 <541..870 CDD:223021
Blue background indicates that the domain is not in the aligned region.

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