Protein Alignment Duba and Otud6b

DIOPT Version :10

• Sequence 1: NP_648482.3
• Gene: Duba / 39302
• FlyBaseID: FBgn0036180
• Length: 659
• Species: Drosophila melanogaster
• Sequence 2: XP_038965351.1
• Gene: Otud6b / 297911
• RGDID: 1310024
• Length: 333
• Species: Rattus norvegicus
• Alignment Length: 367
• Identity: 78/367 - (21%)
• Similarity: 131/367 - (35%)
• Gaps: 113/367 - (30%)

  Fly     9 PPSAKRVAGNVDPDNKEAQVVVVEQSVVSQ---------THNHAHNHRNVVIDG-------QSPQ 57
            ||:  ||.|:         :||:|:.:..:         .|..........|.|       ...:
  Rat    21 PPA--RVPGH---------LVVMEEILAEELDDEEQLMRRHRKEKKELQAKIQGMKNAVPKNDKK 74

  Fly    58 RRGEVYDELARTHRCSPHKSTRSKRREHHEAHAHLYKRDRLEREKLVHPTAAAGSGAPGVSGSKC 122
            ||.::.:::|:.            .||..:.|     |:.||:.||....:...|.|..||....
  Rat    75 RRKQLTEDVAKL------------EREMEQKH-----REELEQLKLTFKDSKIDSVAVNVSNLVL 122

  Fly   123 NSPP---STSTSGSSSPSAVGRNSPEHLGLGCTTVPTAQVQMSTSTAAANLLKTVEETFSGYNSG 184
            :|.|   |.:.......:|:.:...|.:                  |.|.:     |..||
  Rat   123 DSQPPRISKAQKRREKKAALEKEREERI------------------AEAEI-----ENLSG---- 160

  Fly   185 DEHHQPKERLIPVEEWQRRDLEFAKCMEQRGYELKPVEEDGACLFRSISLQIYGDEEMHDV--IR 247
             ..|...|:|             |:.:..|..|:|.:..||.|::.::..|:...:....|  :|
  Rat   161 -ARHLESEKL-------------AQILAARELEIKHIPSDGHCMYGALEDQLREQDSALTVATLR 211

  Fly   248 QHTMDYIHENREYFGQFVT----------EDINSYIQRKRARDAHGNHIEIQAISEIYSRTVEVY 302
            :.|.:|:..:.:.|..|:|          |:...|........|.|..:|::|:|.|....:|:.
  Rat   212 RQTAEYMQSHSDDFLPFLTNPNTGDMYTPEEFGKYCDDIVNTAAWGGQLELRALSHILKTPIEIL 276

  Fly   303 CYQSNPINIFNSEQSQAGYP--PLRLSYQR-----GSHYNAI 337
            ...:.|| |...|     ||  ||.|.|.|     |.|||::
  Rat   277 QADAPPI-IVGEE-----YPRNPLVLVYMRHAYGLGEHYNSV 312

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Duba	NP_648482.3	OTU_OTUD5-like	215..339	CDD:438589	37/142 (26%)
		PTZ00449	<432..>634	CDD:185628
Otud6b	XP_038965351.1	COG4913	<33..>101	CDD:443941	13/84 (15%)
		OTU_OTUD6	169..313	CDD:438598	40/163 (25%)