DRSC/TRiP Functional Genomics Resources

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Protein Alignment rt and PMT7

DIOPT Version :9

Sequence 1:NP_524025.2 Gene:rt / 39297 FlyBaseID:FBgn0003292 Length:886 Species:Drosophila melanogaster
Sequence 2:NP_010593.3 Gene:PMT7 / 851902 SGDID:S000002715 Length:662 Species:Saccharomyces cerevisiae


Alignment Length:692 Identity:138/692 - (19%)
Similarity:254/692 - (36%) Gaps:167/692 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   202 ELHYGKYISMYMRNIFFFDQHPPLGKQLIAGLVSLAGYDGNYTFTRIGEPYSPEMPIFWFRFLPA 266
            |....:.|..|:...|:..:.||...|..:.:..|          :|.|.         .|::..
Yeast    64 EQELSQLIQFYLDKAFYIHELPPFTIQFYSIIRRL----------KIAEN---------LRYVSL 109

  Fly   267 MCGSLLAPAVYNLLLEAKLSRWSSALGGLLVVLDN--SLLTQSRFVLMESMLLLATTVGIACLLR 329
            ...|.....::.:......||..||.|  |::|.|  :...:...:..:|:.....:|.|...:.
Yeast   110 FLNSSTLGFLFLITRRINCSRLISATG--LLILSNWETFRNEGTIISFDSLEWCLFSVVIYSFIS 172

  Fly   330 FQRSRLGSLEWFFTGTAAAVCLGAAGTVKYVGFLALGLAFYLLCRHLWQLLYDAGLTDRQLWMHA 394
            ...::||:..||......::.||.|.:.|::|.:..........|...:|:.|..:|..|:....
Yeast   173 ISIAKLGTTNWFANVITLSISLGLAISSKFIGIVTWAFVILSFVRQFDRLISDVKVTTIQIIKFV 237

  Fly   395 ISRLLIFVGIPLAVYLGVFY----IHFKTLHRAGPHDSIMTSAFQASLDGGLASITKGQPLAVVH 455
            |..||..:.||.:::: :.|    .:|||  ........|::.|::.|.|     .:.||..:.:
Yeast   238 ILCLLFVLIIPGSIFI-ISYSNLLSNFKT--DTPQFSKYMSTYFKSYLRG-----PQVQPSRLYY 294

  Fly   456 GSQITLRHTHGRTCWLHSHAAVYPVRYPDKRGSSHQQQVTCYSFKD--VNNWWLVKRPTK----E 514
            ||.|||||......:|.||...||        |...:|:...||::  .:|.||::.||.    .
Yeast   295 GSTITLRHLDSMVGYLASHDISYP--------SDVDEQLVALSFEEFAADNEWLIEHPTLNLSFS 351

  Fly   515 NLVVGDEPDIIRHGEIIQLVHGITSRALNSHDVAAAMTPQCQ--EVSCYIDYEIKMAGELLWRV- 576
            .:...|:...:..|:.|:|.|..|.:.|.:......::.|..  ::||..|...:...:..|.| 
Yeast   352 EVYHADQLIPVEFGQSIKLRHKSTGKLLRASTAKPPISEQDYDFQISCTKDSNYEGGMDERWDVL 416

  Fly   577 ----EILN--RDSEGDIW-HAIKSEVRLVHVSTEASLKFSGRQLPEWGFNQHEVVADREKAIHED 634
                ||.|  :|:..|.: ..::||:|..:......|.....:|||||..:.||:......|.. 
Yeast   417 LIKDEINNDKKDNADDKYIKPLQSEIRFYNNGQRCGLLGHDLRLPEWGRFEQEVLCMEYPVIPR- 480

  Fly   635 AIWNVEEHRYTQTEDHRERERQMLTAEMIPTKRTRISF-----------------------WAKL 676
                                    |..:|.:.:..:.|                       |::.
Yeast   481 ------------------------TTFLIDSVQLPVDFQVPMIEYYIGKISSSAEFNHTLSWSQF 521

  Fly   677 LELQSKMLFQTKSVPNHMY------------SSMPHEWPL-MDKGIAYWLDSQSSAQIYLLGNIL 728
            |.|..:.:|  |....:.|            :....:||: :|.....|.:             .
Yeast   522 LYLFKEYIF--KQYKYNYYIKYGKNKVTFEDAFAVEKWPITLDTDSPVWFN-------------F 571

  Fly   729 LWYTATMGILVYAGLLAFYAMRRQRL-----------CFDISEQEWQRFVLAGDTFFMGYVMHYI 782
            .||.:.:.:::      |..::.:|:           .|.|   :|:.:...|....:|:.:|:.
Yeast   572 AWYGSLLSMII------FMCVQCKRMISWNPWTTAEPSFSI---KWEVYNEFGWECIVGWFLHFY 627

  Fly   783 -----PYFCVDRTLFLHNYLPAFVFKLLLLCFVVEHLDYLLR 819
                 |:|.:.:.|    |..:|.|.:|.|   :|.||.|.:
Yeast   628 IFTMSPHFNLGKKL----YFQSFFFSVLCL---LESLDCLAK 662

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rtNP_524025.2 PMT 178..421 CDD:280519 46/224 (21%)
PMT1 180..877 CDD:224839 138/692 (20%)
MIR 452..508 CDD:197746 18/57 (32%)
MIR 522..578 CDD:197746 12/62 (19%)
MIR 586..642 CDD:197746 13/56 (23%)
PMT_4TMC 672..875 CDD:292810 33/200 (17%)
PMT7NP_010593.3 PMT1 1..661 CDD:224839 137/689 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1928
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10050
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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