DRSC/TRiP Functional Genomics Resources

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Protein Alignment rt and Sdf2l1

DIOPT Version :9

Sequence 1:NP_524025.2 Gene:rt / 39297 FlyBaseID:FBgn0003292 Length:886 Species:Drosophila melanogaster
Sequence 2:NP_071719.1 Gene:Sdf2l1 / 64136 MGIID:2149842 Length:221 Species:Mus musculus


Alignment Length:214 Identity:60/214 - (28%)
Similarity:89/214 - (41%) Gaps:48/214 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   423 AGPHDSIMTSAFQASLDGGLASITKGQPLAVVHGSQITLRHTHGRTCWLHSHAAVYPVRYPDKRG 487
            |||  :::......|:..|.||  |.....|..||.:.|.:||.:. .||||...|        |
Mouse    10 AGP--TLLGLLLALSVRSGGAS--KASAGLVTCGSVLKLLNTHHKV-RLHSHDIKY--------G 61

  Fly   488 S-SHQQQVT-CYSFKDVNNWWLVKRPTKENLVVGDEPDIIRHGEIIQLVHGITSRALNSHDVAAA 550
            | |.||.|| .....|.|::|.::..::.....|..   :|.|:.::|.|.:|.:.|::|...:.
Mouse    62 SGSGQQSVTGVEESDDANSYWRIRGGSEGGCPRGLP---VRCGQAVRLTHVLTGKNLHTHHFPSP 123

  Fly   551 MTPQCQEVSCYIDYEIKMAGELLWRVEILNRDSEG---DIWHA--------IKSEVRLVHVSTEA 604
            ::.. ||||.:        ||          |.||   |:|..        .::.||..||.|..
Mouse   124 LSNN-QEVSAF--------GE----------DGEGDDLDLWTVRCSGQHWEREASVRFQHVGTSV 169

  Fly   605 SLKFSGRQLPEWGFNQHEV 623
            .|..:|.|.......||||
Mouse   170 FLSVTGEQYGNPIRGQHEV 188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rtNP_524025.2 PMT 178..421 CDD:280519
PMT1 180..877 CDD:224839 60/214 (28%)
MIR 452..508 CDD:197746 21/57 (37%)
MIR 522..578 CDD:197746 13/55 (24%)
MIR 586..642 CDD:197746 14/46 (30%)
PMT_4TMC 672..875 CDD:292810
Sdf2l1NP_071719.1 MIR 34..84 CDD:197746 21/58 (36%)
MIR 95..150 CDD:197746 19/76 (25%)
Ins145_P3_rec 159..201 CDD:302989 12/30 (40%)
Prevents secretion from ER. /evidence=ECO:0000255|PROSITE-ProRule:PRU10138 218..221
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1928
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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