DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rt and Sdf2l1

DIOPT Version :10

Sequence 1:NP_524025.2 Gene:rt / 39297 FlyBaseID:FBgn0003292 Length:886 Species:Drosophila melanogaster
Sequence 2:NP_071719.1 Gene:Sdf2l1 / 64136 MGIID:2149842 Length:221 Species:Mus musculus


Alignment Length:214 Identity:60/214 - (28%)
Similarity:89/214 - (41%) Gaps:48/214 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   423 AGPHDSIMTSAFQASLDGGLASITKGQPLAVVHGSQITLRHTHGRTCWLHSHAAVYPVRYPDKRG 487
            |||  :::......|:..|.||  |.....|..||.:.|.:||.:. .||||...|        |
Mouse    10 AGP--TLLGLLLALSVRSGGAS--KASAGLVTCGSVLKLLNTHHKV-RLHSHDIKY--------G 61

  Fly   488 S-SHQQQVT-CYSFKDVNNWWLVKRPTKENLVVGDEPDIIRHGEIIQLVHGITSRALNSHDVAAA 550
            | |.||.|| .....|.|::|.::..::.....|..   :|.|:.::|.|.:|.:.|::|...:.
Mouse    62 SGSGQQSVTGVEESDDANSYWRIRGGSEGGCPRGLP---VRCGQAVRLTHVLTGKNLHTHHFPSP 123

  Fly   551 MTPQCQEVSCYIDYEIKMAGELLWRVEILNRDSEG---DIWHA--------IKSEVRLVHVSTEA 604
            ::.. ||||.:        ||          |.||   |:|..        .::.||..||.|..
Mouse   124 LSNN-QEVSAF--------GE----------DGEGDDLDLWTVRCSGQHWEREASVRFQHVGTSV 169

  Fly   605 SLKFSGRQLPEWGFNQHEV 623
            .|..:|.|.......||||
Mouse   170 FLSVTGEQYGNPIRGQHEV 188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rtNP_524025.2 PMT 178..421 CDD:396786
beta-trefoil_MIR_POMT1 453..644 CDD:467752 52/184 (28%)
PMT_4TMC 674..873 CDD:465056
Sdf2l1NP_071719.1 beta-trefoil_MIR_SDF2_meta 36..210 CDD:467764 52/184 (28%)
Prevents secretion from ER. /evidence=ECO:0000255|PROSITE-ProRule:PRU10138 218..221
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.