Sequence 1: | NP_524025.2 | Gene: | rt / 39297 | FlyBaseID: | FBgn0003292 | Length: | 886 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001016483.1 | Gene: | sdf2 / 549237 | XenbaseID: | XB-GENE-489307 | Length: | 218 | Species: | Xenopus tropicalis |
Alignment Length: | 224 | Identity: | 61/224 - (27%) |
---|---|---|---|
Similarity: | 93/224 - (41%) | Gaps: | 66/224 - (29%) |
- Green bases have known domain annotations that are detailed below.
Fly 437 SLDGGLASITKGQPLAVVHGSQITLRHTHGRTCWLHSHAAVYPVRYPDKRGS-SHQQQVT-CYSF 499
Fly 500 KDVNNWWLVKRPTKENLVVGDEPDIIRHGEIIQLVHGITSRALNSHDVAAAMTPQCQEVSCYIDY 564
Fly 565 EIKMAGELLWRVEILNRDSEGDI---WHAI--------KSEVRLVHVSTEASLKFSGRQLPEWGF 618
Fly 619 NQHEVVADREKAIH------EDAIWNVEE 641 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
rt | NP_524025.2 | PMT | 178..421 | CDD:280519 | |
PMT1 | 180..877 | CDD:224839 | 61/224 (27%) | ||
MIR | 452..508 | CDD:197746 | 19/57 (33%) | ||
MIR | 522..578 | CDD:197746 | 14/55 (25%) | ||
MIR | 586..642 | CDD:197746 | 19/73 (26%) | ||
PMT_4TMC | 672..875 | CDD:292810 | |||
sdf2 | NP_001016483.1 | MIR | 30..79 | CDD:197746 | 21/65 (32%) |
MIR | 39..183 | CDD:280906 | 53/190 (28%) | ||
MIR | 90..144 | CDD:197746 | 20/72 (28%) | ||
MIR | 146..199 | CDD:197746 | 15/60 (25%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |